Chain length effects on helix‐hairpin distribution in short peptides with Aib‐DAla and Aib‐Aib Segments

A Rajagopal, S Aravinda, S Raghothama… - Peptide …, 2011 - Wiley Online Library
A Rajagopal, S Aravinda, S Raghothama, N Shamala, P Balaram
Peptide Science, 2011Wiley Online Library
The Aib‐dAla dipeptide segment has a tendency to form both type‐I′/III′ and type‐I/III β‐
turns. The occurrence of prime turns facilitates the formation of β‐hairpin conformations,
while type‐I/III turns can nucleate helix formation. The octapeptide Boc‐Leu‐Phe‐Val‐Aib‐
dAla‐Leu‐Phe‐Val‐OMe (1) has been previously shown to form a β‐hairpin in the
crystalline state and in solution. The effects of sequence truncation have been examined
using the model peptides Boc‐Phe‐Val‐Aib‐Xxx‐Leu‐Phe‐NHMe (2, 6), Boc‐Val‐Aib‐Xxx …
Abstract
The Aib‐DAla dipeptide segment has a tendency to form both type‐I′/III′ and type‐I/III β‐turns. The occurrence of prime turns facilitates the formation of β‐hairpin conformations, while type‐I/III turns can nucleate helix formation. The octapeptide Boc‐Leu‐Phe‐Val‐Aib‐DAla‐Leu‐Phe‐Val‐OMe (1) has been previously shown to form a β‐hairpin in the crystalline state and in solution. The effects of sequence truncation have been examined using the model peptides Boc‐Phe‐Val‐Aib‐Xxx‐Leu‐Phe‐NHMe (2, 6), Boc‐Val‐Aib‐Xxx‐Leu‐NHMe (3, 7), and Boc‐Aib‐Xxx‐NHMe (4, 8), where Xxx = DAla, Aib. For peptides with central Aib‐Aib segments, Boc‐Phe‐Val‐Aib‐Aib‐Leu‐Phe‐NHMe (6), Boc‐Val‐Aib‐Aib‐Leu‐NHMe (7), and Boc‐Aib‐Aib‐NHMe (8) helical conformations have been established by NMR studies in both hydrogen bonding (CD3OH) and non‐hydrogen bonding (CDCl3) solvents. In contrast, the corresponding hexapeptide Boc‐Phe‐Val‐Aib‐DAla‐Leu‐Phe‐Val‐NHMe (2) favors helical conformations in CDCl3 and β‐hairpin conformations in CD3OH. The β‐turn conformations (type‐I′/III) stabilized by intramolecular 4→1 hydrogen bonds are observed for the peptide Boc‐Aib‐DAla‐NHMe (4) and Boc‐Aib‐Aib‐NHMe (8) in crystals. The tetrapeptide Boc‐Val‐Aib‐Aib‐Leu‐NHMe (7) adopts an incipient 310‐helical conformation stabilized by three 4→1 hydrogen bonds. The peptide Boc‐Val‐Aib‐DAla‐Leu‐NHMe (3) adopts a novel α‐turn conformation, stabilized by three intramolecular hydrogen bonds (two 4→1 and one 5→1). The Aib‐DAla segment adopts a type‐I′ β‐turn conformation. The observation of an NOE between Val (1) NH↔HNCH3 (5) in CD3OH suggests, that the solid state conformation is maintained in methanol solutions. © 2011 Wiley Periodicals, Inc. Biopolymers (Pept Sci) 96: 744–756, 2011.
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