Compared to open sea environments, there is still limited knowledge about microplastic levels in semi-enclosed systems such as coastal lagoons. This work aims to assess the levels of MPs in the waters of an urban lagoon (Bizerte lagoon, northern Tunisia) and to study the effects of environmental factors on their distribution and abundance. Average concentration of total MPs was found to be 453.0 ± 335.2 items m⁻³. The upper 25 cm water layer of the lagoon is most likely to contain ~16.99 × 10⁹ MPs items (which correspond to a total mass of 42.47 t). Fibers were the primary MPs types encountered, and most of MPs particles identified were white and clear-colored. Polyethylene and polypropylene were the predominant polymer types in Bizerte lagoon. Among the various potential plastic sources of MPs, unmanaged domestic plastic wastes are likely to be the major source of plastic pollution in the lagoon. Several environmental factors appeared to influence the distribution and density of MPs in the lagoon waters. These information contribute to better understand the dynamics of MPs in lagoons and to develop environmental management actions.