Understanding nucleic acid–ion interactions

J Lipfert, S Doniach, R Das… - Annual review of …, 2014 - annualreviews.org
… familiarize nucleic acid experimentalists with the physical concepts that underlie nucleic
acid… Throughout, we provide practical strategies for interpreting and analyzing nucleic acid

Discovering DNA: Friedrich Miescher and the early years of nucleic acid research

R Dahm - Human genetics, 2008 - Springer
… the veil which still utterly conceals the inner processes of cell growth.” (Miescher 1871c). …
information key questions moved into the centre of attention, for example, how this information

Deciphering key features in protein structures with the new ENDscript server

X Robert, P Gouet - Nucleic acids research, 2014 - academic.oup.com
… ENDscript takes full advantage of the convenient PyMOL control panel, notably of its ability
to show and hide information or objects with a single click, this facilitating the analysis of the …

CDD: a conserved domain database for interactive domain family analysis

A Marchler-Bauer, JB Anderson… - Nucleic acids …, 2007 - academic.oup.com
… By default, graphical domain summaries hide redundant information from the user. By clicking
on the red balloon (b), representing a conserved domain footprint for the model cd02907, …

Nanopores and nucleic acids: prospects for ultrarapid sequencing

DW Deamer, M Akeson - Trends in biotechnology, 2000 - cell.com
… a single-stranded nucleic acid molecule. Nanopore detection and … information encoded in
linear polymers. If single-nucleotide resolution can be achieved, it is possible that nucleic acid

Gene: a gene-centered information resource at NCBI

GR Brown, V Hem, KS Katz, M Ovetsky… - Nucleic acids …, 2015 - academic.oup.com
The National Center for Biotechnology Information's (NCBI) Gene database ( www.ncbi.nlm.nih.gov/gene
) integrates gene-specific information from multiple data sources. NCBI …

… and visualization of amino acid binding motifs and sequence profiles including sequence weighting, pseudo counts and two-sided representation of amino acid …

MCF Thomsen, M Nielsen - Nucleic acids research, 2012 - academic.oup.com
… The intention of a sequence logo is to concentrate into a single … position, the amount of
information present at every position and … on the x-axis and hide various features of the graph. …

MIPS: analysis and annotation of proteins from whole genomes in 2005

HW Mewes, D Frishman, KFX Mayer… - Nucleic acids …, 2006 - academic.oup.com
current work on creating and maintaining genome databases is to extend gene centered
information to information on interactions within … uniform interface while hiding the data resource …

TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support

T Vergoulis, IS Vlachos, P Alexiou… - Nucleic acids …, 2012 - academic.oup.com
… rendering further information in an easy and intuitive way. The user can show or hide this
information by simply clicking on the arrows next to each entry. The extra information presented …

New tricks for modelers from the crystallography toolkit: the particle mesh Ewald algorithm and its use in nucleic acid simulations

T Darden, L Perera, L Li, L Pedersen - Structure, 1999 - cell.com
… ], even when counter-ions and explicit solvent were present. Thus, nucleic acid simulations
were seen to be particularly sensitive to the treatment of electrostatics. Improvements in DNA …