Contribution of the RNA Chaperone Hfq to Environmental Fitness and Symbiosis in Sinorhizobium meliloti

JI Jiménez‐Zurdo, O Torres‐Quesada… - Biological Nitrogen …, 2015 - Wiley Online Library
Biological Nitrogen Fixation, 2015Wiley Online Library
Hfq is a phylogenetically widespread RNA‐binding protein that has emerged as a global
regulator of gene expression with a broad impact on bacterial physiology. The symbiotic
nitrogen‐fixing α‐proteobacterium Sinorhizobium meliloti expresses an Hfq protein that
strongly resembles its well‐characterized enterobacterial counterparts in terms of predicted
motifs and secondary/tertiary structures. Hfq loss‐of‐function compromises diverse
responses of free‐living rhizobia to stress and the overall symbiotic performance. This …
Summary
Hfq is a phylogenetically widespread RNA‐binding protein that has emerged as a global regulator of gene expression with a broad impact on bacterial physiology. The symbiotic nitrogen‐fixing α‐proteobacterium Sinorhizobium meliloti expresses an Hfq protein that strongly resembles its well‐characterized enterobacterial counterparts in terms of predicted motifs and secondary/tertiary structures. Hfq loss‐of‐function compromises diverse responses of free‐living rhizobia to stress and the overall symbiotic performance. This phenotypic pleiotropy relies on a large Hfq regulon that involves a wide range of gene functions, including symbiotic nitrogen fixation. Most of the Hfq‐dependent mRNAs are predicted to be posttranscriptionally regulated by the concerted activity of Hfq and its cognate partner trans‐encoded antisense small noncoding RNAs (sRNAs). Recent genome‐wide screens have uncovered the complex sRNA output from the S. meliloti genome, but the functions of the vast majority of the newly identified sRNAs are presently unknown. Our knowledge on Hfq‐dependent phenotypes and genes provides a starting point to decipher sRNA functions in rhizobia.
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