Ensembl 2014

P Flicek, MR Amode, D Barrell, K Beal… - Nucleic acids …, 2014 - academic.oup.com
… every Ensembl release via a merge of the Ensembl evidence-… Ensembl variation annotation
integrates all publicly available … variants in the 18 Ensembl species with supported variation …

Ensembl Genomes 2016: more genomes, more complexity

PJ Kersey, JE Allen, I Armean, S Boddu… - Nucleic acids …, 2016 - academic.oup.com
Ensembl Genomes has continued to grow in 2014 and 2015. In the last two years, six species
have been added to Ensembl … to 55, and 11 species to Ensembl Plants, bringing the total …

Ensembl 2017

BL Aken, P Achuthan, W Akanni… - Nucleic acids …, 2017 - academic.oup.com
… The Ensembl project was originally founded to annotate the human genome and has grown
… in Ensembl, we integrate diverse data to produce a collection of Ensembl resources for gene …

Ensembl 2015

F Cunningham, MR Amode, D Barrell… - Nucleic acids …, 2015 - academic.oup.com
… As of October 2014 (Ensembl release 77), we include full … set, made available in Ensembl
release 77 (October 2014). In … from human to all other species in Ensembl and also our cross-…

Ensembl 2016

A Yates, W Akanni, MR Amode, D Barrell… - Nucleic acids …, 2016 - academic.oup.com
… Building on our release in 2014, eight endpoints now support batch querying via the HTTP
POST method including our sequence, identifier lookup and archive endpoints. We also …

Ensembl comparative genomics resources

J Herrero, M Muffato, K Beal, S Fitzgerald, L Gordon… - Database, 2016 - academic.oup.com
… A new and fully updated Ensembl Compara database is created with every Ensembl release.
We use the eHive ( 28 ) workflow system to manage all of the computational pipelines. The …

The Ensembl REST API: Ensembl data for any language

A Yates, K Beal, S Keenan, W McLaren… - …, 2015 - academic.oup.com
… The Ensembl REST server enables the easy retrieval of a wide range of Ensembl data by most
… We also introduce bindings to the popular Ensembl Variant Effect Predictor tool permitting …

The Ensembl gene annotation system

BL Aken, S Ayling, D Barrell, L Clarke, V Curwen… - Database, 2016 - academic.oup.com
Ensembl provides high quality … of Ensembl gene sets in these and other studies, combined
with experience and continual development in genome annotation, has established Ensembl

Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species

PJ Kersey, JE Allen, A Allot, M Barba… - Nucleic acids …, 2018 - academic.oup.com
… an archived version of release 32 of Ensembl Plants, alongside the live version. It is planned
to shortly deploy archival versions of all Ensembl Genomes sites containing the release 37 …

The ensembl regulatory build

DR Zerbino, SP Wilder, N Johnson, T Juettemann… - Genome biology, 2015 - Springer
… We thank the other members of the wider Ensembl group at the EBI and the WTSI. Ensembl
receives majority funding from the Wellcome Trust (grant number WT095908) with additional …