In this study, the eutrophication status of the Berdan and Göksu River Basins was determined by using recently obtained data between September 2021 and August 2022. Very high total phosphorus and trophic index (TRIX) values indicated that all stations visited in the Berdan, and Göksu River Basins were characterized as eutrophic (bad). The correlations between TRIX and eutrophication-related parameters showed strong and positive relations between TRIX and concentrations of Chlorophyll-a and total phosphorus strongly suggesting that the increase in total phosphorus concentrations highly enhanced primary productivity and eutrophication. The P-enrichment in the Berdan and Göksu River Basins caused eutrophication in these river waters, leading to the further development of coastal eutrophication in the P-limited Northeastern Mediterranean shelf waters.