… status of FSL. We also include some descriptions of parts of FSL that are not well covered
in the existing literature. We hope that some of this content might be of interest to users of FSL, …

… has been implemented as freely available software tools within FMRIB's Software Library
(FSL). … Nonspatial mixture modeling is already used in FSL for statistically inferring areas of “…

Typically in neuroimaging we are looking to extract some pertinent information from imperfect,
noisy images of the brain. This might be the inference of percent changes in blood flow in …

… from FSL-FIRST and FreeSurfer to manual segmentation … FreeSurfer and FSL both provide
frequently used packages for … The volumes obtained with FreeSurfer and FSL-FIRST were …

… FSL version 4.1 is employed for the whole process of registration, skull stripping and brain
tissue segmentation. Since the FSL… , skull stripping is performed using the FSL’s own brain …

… using FLIRT, another FSL program, in order to align the input and template model. FSL-FAST
offers white matter-gray matter differentiation but the FSL package does not include full …

… the fundamental functionality that FSL and other imaging software … FSL functions in R, we
propose a user-friendly interface between R and FSL that preserves all the functionality of FSL…

… Instead, we first performed FSL-FAST segmentation within each mask overlaid on the
corresponding native image. The FSL-FAST derived brain tissue mask obtained when using the …

… scanners than FSL-SIENAX (p=0.004). MS lesion filling changed the output of FSL-SIENAX, …
For this study, FSL-SIENAX was run with the optimised brain extraction parameters ‘-B -f 0.1’…

… Subsequently, we applied FIRST (using the FSL script run_first_all) to the hybrid contrast …
transformation matrix to MNI space (in the mentioned FSL script above). Finally, we inversely …