Functional profiling of COVID-19 respiratory tract microbiomes

N Haiminen, F Utro, E Seabolt, L Parida - Scientific Reports, 2021 - nature.com
… -2 genomes and taxonomic profiling of the microbiomes, here we perform global functional
profiling to characterize altered biological processes in the respiratory tract microbiomes. Our …

The lower respiratory tract microbiome of critically ill patients with COVID-19

P Gaibani, E Viciani, M Bartoletti, RE Lewis, T Tonetti… - Scientific reports, 2021 - nature.com
… the lower respiratory tract bacterial microbiome of COVID-19 critically ill patients in comparison
to COVID-19-negative patients. We performed a 16S rRNA profiling on bronchoalveolar …

Characterization of the upper respiratory bacterial microbiome in critically Ill COVID-19 patients

X Bai, A Narayanan, M Skagerberg, R Ceña-Diez… - Biomedicines, 2022 - mdpi.com
… from the human respiratory tract [35], was found in two of the COVID-19 patients who showed
high … a distinct URT microbiome profile in patients with critical COVID-19 compared to non-…

Oropharyngeal microbiome profiled at admission is predictive of the need for respiratory support among COVID-19 patients

ES Bradley, AL Zeamer, V Bucci, L Cincotta… - Frontiers in …, 2022 - frontiersin.org
… the upper respiratory tract, is … microbiome of suspected COVID-19 patients presenting to
the Emergency Department and an inpatient COVID-19 unit with symptoms of acute COVID-19. …

[PDF][PDF] Functional pathways in respiratory tract microbiome separate COVID-19 from community-acquired pneumonia patients

N Haiminen, F Utro, E Seabolt, L Parida - BioRxiv, 2020 - academia.edu
… role of the microbiome in COVID-19, we introduce a functional … lavage fluid (BALF) of
COVID-19 patients, healthy subjects, and … profiling of the microbiomes, here we perform functional

Microbiome profiling using shotgun metagenomic sequencing identified unique microorganisms in COVID-19 patients with altered gut microbiota

S Li, S Yang, Y Zhou, C Disoma, Z Dong, A Du… - Frontiers in …, 2021 - frontiersin.org
… To investigate the compositions and functions of the gut microbiome in patients with
COVID-19, we sequenced the metagenome of 66 fecal samples (47 from patients with COVID-19

Unraveling the interconnection patterns across lung microbiome, respiratory diseases, and COVID-19

E Stavropoulou, K Kantartzi, C Tsigalou… - Frontiers in cellular …, 2021 - frontiersin.org
… knowledge of the microbiota profile should clarify the role of the microbiome in health and
… the respiratory system and causing an acute respiratory disease known as COVID-19. SARS…

Alterations in the respiratory tract microbiome in COVID-19: current observations and potential significance

C Merenstein, FD Bushman, RG Collman - Microbiome, 2022 - Springer
… The respiratory tract microbiome is thought … airway microbiome influence COVID-19? Here,
we review the results of 56 studies examining COVID-19 and the respiratory tract microbiome

Diversity and genomic determinants of the microbiomes associated with COVID-19 and non-COVID respiratory diseases

MN Hoque, MS Rahman, R Ahmed, MS Hossain… - Gene reports, 2021 - Elsevier
profiles of microbiome diversity and associated microbial genomic features found in both
COVID-19 … study suggest that respiratory tract disease associated microbiomes could have a …

Assessment of upper respiratory and gut bacterial microbiomes during COVID-19 infection in adults: potential aerodigestive transmission

H Al-Momani, A Nelson, H Al Balawi, D Al Balawi… - Scientific Reports, 2025 - nature.com
… to infections of the respiratory tract, such as bronchiolitis, and has … marked alterations in the
respiratory tract between ICU- and … The gut and respiratory microbiome profile of COVID-19