Several studies have focused on the importance of river bathymetry (channel geometry) in hydrodynamic routing along individual reaches. However, its effect on other watershed processes such as infiltration and surface water (SW)‐groundwater (GW) interactions has not been explored across large river networks. Surface and sbsurface processes are interdependent, therefore, errors due to inaccurate representation of one watershed process can cascade across other hydraulic or hydrologic processes. This study hypothesizes that accurate bathymetric representation is not only essential for simulating channel hydrodynamics but also affects subsurface processes by impacting SW‐GW interactions. Moreover, quantifying the effect of bathymetry on surface and subsurface hydrological processes across a river network can facilitate an improved understanding of how bathymetric characteristics affect these processes across large spatial domains. The study tests this hypothesis by developing physically based distributed models capable of bidirectional coupling (SW‐GW) with four configurations with progressively reduced levels of bathymetric representation. A comparison of hydrologic and hydrodynamic outputs shows that changes in channel geometry across the four configurations has a considerable effect on infiltration, lateral seepage, and location of water table across the entire river network. For example, when using bathymetry with inaccurate channel conveyance capacity but accurate channel depth, peak lateral seepage rate exhibited 58% error. The results from this study provide insights into the level of bathymetric detail required for accurately simulating flooding‐related physical processes while also highlighting potential issues with ignoring bathymetry across lower order streams such as spurious backwater flow, inaccurate water table elevations, and incorrect inundation extents.