[HTML][HTML] Issues with SARS-CoV-2 sequencing data

N De Maio, C Walker, R Borges, L Weilguny… - 2020 - virological.org
… or who rely on available SARS-CoV-2 genome sequences in … and masking alignments of
SARS-CoV-2 sequences. We also … and high rate of apparent sequencing/mapping errors. We …

Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities

M Chiara, AM D'Erchia, C Gissi… - Briefings in …, 2021 - academic.oup.com
… current and future SARS-CoV-2-related data would greatly facilitate … and handling of
SARS-CoV-2-related sequencing data, will … In January 2020, a novel betacoronavirus, …

[HTML][HTML] Emergence of SARS-CoV-2 b. 1.1. 7 lineage—united states, december 29, 2020–january 12, 2021

SE Galloway - MMWR. Morbidity and mortality weekly report, 2021 - cdc.gov
… promotes open data-sharing to facilitate the use of SARS-CoV-2 sequence data. To track …
The simulation was initialized with 60 reported cases of SARS-CoV-2 infection per 100,000 …

Shortcomings of SARS-CoV-2 genomic metadata

L Gozashti, R Corbett-Detig - BMC research notes, 2021 - Springer
… to confirm our results and detect cases missed by the … all GISAID SARS-CoV-2 sequences
as of November 27th 2020. … and all labs who contributed SARS-CoV-2 sequence data. A full …

Laboratory testing of SARS‐CoV, MERS‐CoV, and SARSCoV2 (2019‐nCoV): Current status, challenges, and countermeasures

Y Yan, L Chang, L Wang - Reviews in medical virology, 2020 - Wiley Online Library
Data showed that SARS-CoV-2 RNA can be detected in stools of 53% (9/17) confirmed cases
… Another study showed that 25% SARS-CoV-2 infected patients had detectable viral RNA …

[HTML][HTML] Characteristics of SARS-CoV-2 variants of concern B. 1.1. 7, B. 1.351 or P. 1: data from seven EU/EEA countries, weeks 38/2020 to 10/2021

T Funk, A Pharris, G Spiteri, N Bundle… - …, 2021 - eurosurveillance.org
… analysed data on COVID-19 cases infected with SARS-CoV-2 … of all SARS-CoV-2-positive
specimens are sequenced, … specimens for sequencing and sequencing results to the National …

The importance and challenges of identifying SARS-CoV-2 reinfections

A Babiker, CE Marvil, JJ Waggoner… - Journal of clinical …, 2021 - Am Soc Microbiol
… well as viral genetic sequencing data to support reinfection rather … To synthesize lessons
from the cases of SARS-CoV-2 … ) on 15 November 2020 for reports of SARS-CoV-2 reinfection, …

[HTML][HTML] Genomic sequencing effort for SARS-CoV-2 by country during the pandemic

Y Furuse - International Journal of Infectious Diseases, 2021 - Elsevier
… of SARS-CoV-2 infected cases but few published sequencesdata first became available
from China on January 10, 2020. … did not check the quality of sequence data such as a Q-score …

Rapid implementation of SARS-CoV-2 sequencing to investigate cases of health-care associated COVID-19: a prospective genomic surveillance study

LW Meredith, WL Hamilton, B Warne… - The Lancet infectious …, 2020 - thelancet.com
SARS-CoV-2 sequencing combined with detailed epidemiological analysis to investigate
health-care associated SARS-CoV-2 … Each week, clinical metadata and sequencing data were …

SARS-CoV-2 variants of concern in the United States—challenges and opportunities

RP Walensky, HT Walke, AS Fauci - Jama, 2021 - jamanetwork.com
… , 2020, the first genomic sequence of the severe acute respiratory syndrome coronavirus 2
(SARS-CoV-2… , 468 000 sequences of SARS-CoV-2 from COVID-19 cases globally have been …