Light-up and FRET aptamer reporters; evaluating their applications for imaging transcription in eukaryotic cells

M Ilgu, J Ray, L Bendickson, T Wang, IM Geraskin… - Methods, 2016 - Elsevier
aptamer ligands, their contributions to background noise, and the impact of tandem aptamer
… Our results suggest the need for caution in using light-up aptamers as reporters for imaging …

RNA fluorescence with light-up aptamers

J Ouellet - Frontiers in chemistry, 2016 - frontiersin.org
… the light-up aptamer progress and applications such as RNA trafficking, metabolite
sensing via a transducer linked to metabolite-sensing aptamers… and visualized by FRET (fluorescence …

Recent development of fluorescent light-up RNA aptamers

H Zhou, S Zhang - Critical Reviews in Analytical Chemistry, 2022 - Taylor & Francis
… fluorescent reporter for … two aptamers closer to each other and leading to a high FRET
efficiency between Spinach-DFHBI and Mango-YO3-biotin complexes ( Figure 7(b) ). This FRET

Light-up RNA aptamers and their cognate fluorogens: from their development to their applications

F Bouhedda, A Autour, M Ryckelynck - International journal of molecular …, 2017 - mdpi.com
… transfer (FRET, [35]) or contact-mediated quenching [32,55]. However, the presence of an …
allowed establishing the proof-of-concept experiment using light-up aptamers as reporter [84]. …

RNA structure and cellular applications of fluorescent lightup aptamers

S Neubacher, S Hennig - Angewandte Chemie International …, 2019 - Wiley Online Library
reporters on the RNA level. Since intrinsically fluorescent RNAs are not known, the fluorescent
reporter … ) were fused together in a system called “apta-FRET” (Figure 10 C). The fusion of …

Binary (Split) Lightup Aptameric Sensors

DM Kolpashchikov, AA Spelkov - Angewandte Chemie, 2021 - Wiley Online Library
… BLAS have been used as reporters of nucleic acid … RNA sequences of the light-up MG
aptamer 10 were linked to … a Förster resonance energy transfer (FRET). Introduced by Stojanovic …

Development and applications of fluorogen/light-up RNA aptamer pairs for RNA detection and more

M Ryckelynck - RNA Tagging: Methods and Protocols, 2020 - Springer
Light-up RNA aptamers can also be used as reporters to aid in the development of catalytic
… Spinach and Mango aptamers positioned in such a way that FRET can occur between the …

Genetically encoded light-up RNA aptamers and their applications for imaging and biosensing

P Swetha, Z Fan, F Wang, JH Jiang - Journal of materials chemistry B, 2020 - pubs.rsc.org
… and another constant fluorescence reporter (fluorescent proteins or light-up RNA aptamers)
that can … Therefore, the presence of analytes could lead to differences in the FRET ratio. By …

Tracking RNA with light: selection, structure, and design of fluorescence turn-on RNA aptamers

RJ Trachman III, AR Ferre-D'Amare - Quarterly reviews of biophysics, 2019 - cambridge.org
Fluorescence turn-on aptamers, in vitro evolved RNA molecules … Turn-on aptamers have been
selected to bind diverse … Nonetheless, each turn-on aptamer has developed idiosyncratic …

Harmonizing the growing fluorogenic RNA aptamer toolbox for RNA detection and imaging

X Lu, KYS Kong, PJ Unrau - Chemical Society Reviews, 2023 - pubs.rsc.org
… In the past decade, multiple light-up RNA aptamer systems have … two fluorogenic RNA
aptamer reporters: MG aptamer (RNA 1… (Bi-ii) Rigid aptamers are used to measure their FRET