The Chernobyl accident heavily contaminated the largest aquatic system in the Ukraine, requiring the development of a model-based decision support system in the field of aquatic radioecology. The main objectives of the system were to simulate and predict radionuclide dispersion in the Pripyat-Dnieper River-reservoir system, assess the effectiveness of special hydraulic countermeasures designed to decrease the rate of radionuclide dispersion in the water bodies, and support the Dnieper reservoirs' management operations. A hierarchy of mathematical models was developed. A two-dimensional (2-D) vertical-longitudinal model, a 2-D lateral-longitudinal model, a one-dimensional (1-D) channel model and a box-type model are briefly presented. These models describe the main features of radionuclide dispersion, including the processes governing radionuclide-sediment interactions. Examples of the models' applications are presented to show the peculiarities of radionuclide dispersion in this aquatic system.