In recent years, satellite imagery has greatly improved in both spatial and spectral resolution. One of the major unsolved problems in highly developed remote sensing imagery is the manual selection and combination of appropriate features according to spectral and spatial properties. Deep learning framework can learn global and robust features from the training data set automatically, and it has achieved state-of-the-art classification accuracies over different image classification tasks. In this study, a technique is proposed which attempts to classify hyperspectral imagery by incorporating deep learning features. Firstly, deep learning features are extracted by multiscale convolutional auto-encoder. Then, based on the learned deep learning features, a logistic regression classifier is trained for classification. Finally, parameters of deep learning framework are analysed and the potential development is introduced. Experiments are conducted on the well-known Pavia data set which is acquired by the reflective optics system imaging spectrometer sensor. It is found that the deep learning-based method provides a more accurate classification result than the traditional ones.