… But no current R packages are dedicated to solving … R package for the processing of Sanger
sequencing data. sangeranalyseR builds extensively on the excellent sangerseqR package …

This function outputs a chromatogram to the current device or to a PDF file (filename is not
NULL). Primary, Secondary or both basecalls can be shown if they are contained in the …

… /release/bioc/html/sangerseqR.html) as the “sangerseqR” package, creating a common …
The package also contains a full copy of Poly Peak Parser that can be run locally in a Web …

… chromatogram file was imported into R using the sangerseqR package from Bioconductor, …
package, to find the best scoring sequence match location while tolerating amino acid …

We present MultiEditR (Multiple Edit Deconvolution by Inference of Traces in R), the first
algorithm specifically designed to detect and quantify RNA editing from Sanger sequencing (z.…

… The package contains libraries for reading AB1 files, performing base-calls and plotting …
of SangerseqR is the literacy of the R programming language. Usage of this package and its …

… S1) using the package gamlss. We chose the zΓ distribution for three reasons: (1) it has a …
and determined by the makeBaseCalls function of sangerseqR. The percent area of each base …

… a user-defined signal-to-noise ratio as in SangerSeqR [8]. For a given basecall interval, zero
… our knowledge not readily available in other packages either because of GUI restrictions or …

… R specifies the required packages for the web app, most notably sangerseqR for reading
and analyzing .ab1 files (https://bioconductor.org/packages/release/bioc/html/sangerseqR.html)…

… The EditR web app was written with the R package shiny (v. 1.0.1) and helped by … and
determined by the makeBaseCalls function of sangerseqR. The percent area of each base is …