RNA helix stability in mixed Na+/Mg2+ solution

ZJ Tan, SJ Chen - Biophysical journal, 2007 - cell.com
… Mg 2+ in stabilizing DNA and RNA helices. The tightly bound ion model makes quantitative
predictions on how the Na + -Mg 2+ competition determines helix stability and its helix length-…

On the role of magnesium ions in RNA stability

VK Misra, DE Draper - Biopolymers: Original Research on …, 1998 - Wiley Online Library
… We survey a number of specific systems in which Mg2RNA … an RNA in a mixed salt (eg,
MgCl2 and NaCl) solution as30 … concentration of Na along with a fixed concentration of Mg2. …

The Effect of Sodium/Magnesium on RNA Stability and Identification and Characterization of RNA Triloops

MKM Hertel - 2024 - search.proquest.com
… different ratios of Na+/Mg2+ on RNA duplex stability. Optical … to predict RNA stability in
mixed Na+/Mg2+ solutions. In this … when [Mg2+] is comparable to [Na+] that helix stability will …

Competitive binding of Mg2+ and Na+ ions to nucleic acids: from helices to tertiary structures

K Xi, FH Wang, G Xiong, ZL Zhang, ZJ Tan - Biophysical journal, 2018 - cell.com
… in mixed divalent/monovalent ion solutions with desired bulk ion concentrations via molecular
dynamics (MD) simulations and investigated the competitive binding of Mg 2+ /Na + … RNA

Site‐resolved stabilization of a DNA triple helix by magnesium ions

D Coman, IM Russu - Nucleic acids research, 2004 - academic.oup.com
Na + counterions were replaced with Mg 2+ . The exchange rates of imino protons were
measured for a solution of this triple helix … of Mg2+ ions (A) and in the presence of 100 mM Mg2+ …

Tertiary Structure of an RNA Pseudoknot Is Stabilized by “Diffuse” Mg2+ Ions

AM Soto, V Misra, DE Draper - Biochemistry, 2007 - ACS Publications
… Although is defined in terms of molal quantities, the solutions … suggests that BWYV RNA folds
into a stable pseudoknot at Na + … in the unfolding of Helix 1 in BWYV RNA, whereas the T M …

Modeling structure, stability, and flexibility of double-stranded RNAs in salt solutions

L Jin, YZ Shi, CJ Feng, YL Tan, ZJ Tan - Biophysical Journal, 2018 - cell.com
… ) RNAs play essential roles in many processes of cell metabolism. The knowledge of
three-dimensional (3D) structure, stability, and flexibility of dsRNAs in salt solutions is … , stability, …

Mesoscopic model applied to DNA/TNA hybrids and DNA in solutions containing Mg2+

MIM Foscarini - 2022 - repositorio.ufmg.br
… with RNA/DNA, such as the tendency to form A-type helices and a … for Na+, in terms of
equivalent sodium concentration and … cations Mg2+, as well as mixed mono- and divalent Mg2++K…

A guide to ions and RNA structure

DE Draper - Rna, 2004 - rnajournal.cshlp.org
… To answer questions about the effects of ions on RNA stability, a coherent framework
based … -stranded poly(U) to a double-helical RNA is because of the closer phosphate–phosphate …

Effect of helix stability on the formation of loop–loop complexes

P Sehdev, G Crews, AM Soto - Biochemistry, 2012 - ACS Publications
… –loop complexes where two RNA hairpins interact through … were extensively equilibrated in
the appropriate solution … between the Na + and Mg 2+ complexes: the Na + complexes show …