… In Figure 5a there is shown our 2D rendering of the stem-loop secondary structure and
Figure 5b is the corresponding initial model. Simple energy-refinement of the hairpin loop does …

… RNA 3D structures using SimRNA, a method that uses a coarse-grained representation of
RNA … This renders the approach available to an individual who is not necessarily an expert in …

… RNA folding simulations and 3D structure prediction dubbed SimRNA. We aimed to develop
a method that allows for RNA 3D … handed A-helices and render left-handed helices unstable …

… Yet although high-throughput sequencing experiments are resulting in the discovery of
thousands of noncoding RNAs, predicting RNA structure from its sequence remains a huge …

… The starting point of the method we present here is a 3D mesh representing the geometry …
(though some meshes require two helices to render certain edges, as discussed below); and, …

… RNA species and the 3D genome architecture regulation is still being investigated, there is
growing evidence that some RNA species, such as long noncoding RNA … of its high rendering …

… Similarly, it is easy to export the visualized scene to other 3D formats, such as GLTF, for
photorealistic rendering (Figure 1) or 3D printing (Supplementary Figure S4 in the Supp. Mat.). …

… Interestingly, a similar dichotomy exists between our schematic rendering of proteins with …
, but its importance changes within 3D structures of folded RNA molecules. Watson–Crick …

… from the PDB files is rendered in an OpenGL 3D environment to achieve a detailed three-dimensional
structure of 16S ribosomal RNA. The rendering speed critically depends on the …

… present a 3D single-cell imaging technique, termed 3D digital … quantification of single-cell
RNAs and proteins using standard … (A) 3D rendering images of RDCs on single cells show …