Simulation of the diffusional association of barnase and barstar

RR Gabdoulline, RC Wade - Biophysical journal, 1997 - cell.com
The rate of protein association places an upper limit on the response time due to protein
interactions, which, under certain circumstances, can be diffusion-controlled. Simulations of
model proteins show that diffusion-limited association rates are approximately 10 (6)-10 (7)
M-1 s-1 in the absence of long-range forces (Northrup, SH, and HP Erickson. 1992. Kinetics
of protein-protein association explained by Brownian dynamics computer simulations. Proc.
Natl. Acad. Sci. USA 89: 3338–3342). The measured association rates of barnase and …

[PDF][PDF] Simulation ofthe Diffusional Association of Barnase and Barstar

RR Gabdoulline, RC Wade - dasher.wustl.edu
The rate ofprotein association places an upperlimit on the response time due to protein
interactions, which, under certain circumstances, can be diffusion-controlled. Simulations of
model proteins show that diffusion-limited associ-ation rates are-106_107 M-1 S-1 in the
absence oflong-range forces (Northrup, SH, and HP Erickson. 1992. Kinetics of protein-
protein association explained by Brownian dynamics computer simulations. Proc. Natl.
Acad. Sci. USA 89: 3338-3342). The measured association rates of barnaseand barstar are …
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