Microplastics are a widespread environmental contaminant. Although detrimental effects on aquatic organisms are well documented, little is known about the long-term effects of microplastic exposure to filter-feeding organisms at ecologically realistic levels. This study investigates the effects of environmentally relevant concentrations of polyethylene micro beads ranging in size from 3 to 30 μm, on the physiology and energetics of a coastal filter-feeding crab Petrolisthes laevigatus. We evaluated the impact of microplastics by exposing P. laevigatus to two different concentrations and exposure times: i) a chronic exposure for five months at 250 particles L⁻¹, and ii) an acute exposure for 48 h at 20,800 particles L⁻¹, ~80 times higher than the chronic exposure. The results showed that only chronic exposures elicited negative effects on the coastal crab in both, metabolic and physiological parameters. Our findings demonstrate a strong correlation between the ingestion rate and weight loss, even at low concentrations, the crabs exhibited severe nutritional damage as a result of long-term microplastic exposure. By contrast, acute exposure revealed no significant effects to the crabs, a possible explanation for this being short-term compensatory responses. These results suggest that environmentally relevant concentrations of microplastics are harmful to marine organisms, and they should be evaluated during realistic temporal scales, as their effects strongly dependent on the exposure time. Our results also suggest that the effects of microplastics have been likely underestimated to date, due to the dominance of short-term exposures (acute) reported in the current literature.