Stabilities and conformations of Alzheimer's β-amyloid peptide oligomers (Aβ1622, Aβ16–35, and Aβ1035): Sequence effects

B Ma, R Nussinov - … of the National Academy of Sciences, 2002 - National Acad Sciences
Proceedings of the National Academy of Sciences, 2002National Acad Sciences
Previously, we have studied the minimal oligomer size of an aggregate amyloid seed and
the mechanism of seed growth with a multilayer β-sheet model. Under high temperature
simulation conditions, our approach can test the stability of possible amyloid forms. Here, we
report our study of oligomers of Alzheimer's amyloid β-peptide (Aβ) fragments 16–22, 16–35,
and 10–35 (abbreviated Aβ16–22, Aβ16–35, and Aβ10–35, respectively). Our simulations
indicate that an antiparallel β-sheet orientation is the most stable for the Aβ16–22, in …
Previously, we have studied the minimal oligomer size of an aggregate amyloid seed and the mechanism of seed growth with a multilayer β-sheet model. Under high temperature simulation conditions, our approach can test the stability of possible amyloid forms. Here, we report our study of oligomers of Alzheimer's amyloid β-peptide (Aβ) fragments 16–22, 16–35, and 10–35 (abbreviated Aβ16–22, Aβ16–35, and Aβ10–35, respectively). Our simulations indicate that an antiparallel β-sheet orientation is the most stable for the Aβ16–22, in agreement with a solid state NMR-based model [Balbach, J. J., Ishii, Y., Antzutkin, O. N., Leapman, R. D., Rizzo, N. W., et al. (2000) Biochemistry 39, 13748–13759]. A model with twenty-four Aβ16–22 strands indicates a highly twisted fibril. Whereas the short Aβ16–22 and Aβ24–36 may exist in fully extended form, the linear parallel β-sheets for Aβ16–35 appear impossible, mainly because of the polar region in the middle of the 16–35 sequence. However, a bent double-layered hairpin-like structure (called hook) with the polar region at the turn forms parallel β-sheets with higher stability. An intra-strand salt-bridge (D23-K28) stabilizes the bent hairpin-like hook structure. The bent double-β-sheet model for the Aβ10–35 similarly offers oligomer stability.
National Acad Sciences
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