Switch-like compaction of poly (ADP-ribose) upon cation binding

M Badiee, AL Kenet, LR Ganser… - Proceedings of the …, 2023 - National Acad Sciences
Proceedings of the National Academy of Sciences, 2023National Acad Sciences
Poly (ADP-ribose)(PAR) is a homopolymer of adenosine diphosphate ribose that is added to
proteins as a posttranslational modification to regulate numerous cellular processes. PAR
also serves as a scaffold for protein binding in macromolecular complexes, including
biomolecular condensates. It remains unclear how PAR achieves specific molecular
recognition. Here, we use single-molecule fluorescence resonance energy transfer
(smFRET) to evaluate PAR flexibility under different cation conditions. We demonstrate that …
Poly(ADP-ribose) (PAR) is a homopolymer of adenosine diphosphate ribose that is added to proteins as a posttranslational modification to regulate numerous cellular processes. PAR also serves as a scaffold for protein binding in macromolecular complexes, including biomolecular condensates. It remains unclear how PAR achieves specific molecular recognition. Here, we use single-molecule fluorescence resonance energy transfer (smFRET) to evaluate PAR flexibility under different cation conditions. We demonstrate that, compared to RNA and DNA, PAR has a longer persistence length and undergoes a sharper transition from extended to compact states in physiologically relevant concentrations of various cations (Na+, Mg2+, Ca2+, and spermine4+). We show that the degree of PAR compaction depends on the concentration and valency of cations. Furthermore, the intrinsically disordered protein FUS also served as a macromolecular cation to compact PAR. Taken together, our study reveals the inherent stiffness of PAR molecules, which undergo switch-like compaction in response to cation binding. This study indicates that a cationic environment may drive recognition specificity of PAR.
National Acad Sciences
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