Multi-target prediction: a unifying view on problems and methods

W Waegeman, K Dembczyński… - Data Mining and …, 2019 - Springer
… layer, while weights in the output layer are target-specific (the output layer usually contains
m nodes for a multi-target prediction setting with m targets). Likewise, the common idea of pre-…

Practical aspects of microRNA target prediction

T M. Witkos, E Koscianska… - Current molecular …, 2011 - benthamdirect.com
… and approaches of commonly used target predictions algorithms and methods for experimental
… miRNA target analysis and present our approach to miRNA target prediction using the …

Common features of microRNA target prediction tools

SM Peterson, JA Thompson, ML Ufkin… - Frontiers in …, 2014 - frontiersin.org
target interactions for experimental validation. The available tools for miRNA target prediction
… the major computational approaches to miRNA target prediction. Our discussion highlights …

From in silico target prediction to multi-target drug design: current databases, methods and applications

…, S Zimmer, MP Young, JL Jenkins, M Glick… - Journal of …, 2011 - Elsevier
target prediction and which have grown tremendously in size in the past. We furthermore
outline methods for target prediction that … Applications of successful in silico target identification …

RNAhybrid: microRNA target prediction easy, fast and flexible

J Krüger, M Rehmsmeier - Nucleic acids research, 2006 - academic.oup.com
… We demonstrate RNAhybrid's flexibility with the prediction of a non-canonical target site
for Caenorhabditis elegans miR-241 in the 3′-untranslated region of lin-39 . RNAhybrid is …

Improving performance of mammalian microRNA target prediction

H Liu, D Yue, Y Chen, SJ Gao, Y Huang - BMC bioinformatics, 2010 - Springer
… sensitivity and specificity of target prediction by constructing a … the most updated miRNA
target depository called miRecords to … m features {x i }, i=1, ..., m, the relevance D with the target

DIANA-microT web server: elucidating microRNA functions through target prediction

M Maragkakis, M Reczko, VA Simossis… - Nucleic acids …, 2009 - academic.oup.com
… Computational microRNA (miRNA) target prediction is one of the key means for … target
prediction algorithm. The web server provides extensive information for predicted miRNA:target

Survey of computational algorithms for microRNA target prediction

D Yue, H Liu, Y Huang - Current genomics, 2009 - ingentaconnect.com
… for miRNA target prediction in this paper. Computational target prediction algorithms came to
… the goal of sequence-based target prediction is to decide if mRNA m is a target based on x . …

Advances and challenges in computational target prediction

D Sydow, L Burggraaff, A Szengel… - Journal of Chemical …, 2019 - ACS Publications
… Designed for computational biologists, medicinal chemists, and neighboring disciplines, this
review aims to outline the general principle and potential of computational target prediction

Got target?: computational methods for microRNA target prediction and their extension

H Min, S Yoon - Experimental & molecular medicine, 2010 - nature.com
… Here we summarize the rules to predict miRNA targets and introduce some computational …
for miRNA target prediction and the application of the methods. In addition, the issue of target