The differential disease regulome

GK Sandve, S Gundersen, H Rydbeck, IK Glad… - BMC genomics, 2011 - Springer
… To demonstrate the presence of useful signals in the disease regulome, we analyzed a … ,
graft versus host disease, asthma, allergies, a number of autoimmune and infectious diseases. …

A Differential Transcriptional Regulome Approach to Unpack Cancer Biology: Insights on Renal Cell Carcinoma Subtypes

A Caliskan, KY Arga - OMICS: A Journal of Integrative Biology, 2023 - liebertpub.com
… (TCGA) and used the differential regulome methodology that … to identify the regulatory
patterns that are different for each … differential regulome networks between healthy and disease

The tRNA regulome in neurodevelopmental and neuropsychiatric disease

J Blaze, S Akbarian - Molecular psychiatry, 2022 - nature.com
… structures assembled via hydrogen bonds interconnecting the 8 different loops and helices
defining the classical ‘clover-like’ secondary structure (Fig. 1a–c). These include from 5’ to 3’ …

Regulome-based characterization of drug activity across the human diseasome

M Iwata, K Kosai, Y Ono, S Oki, K Mimori… - npj Systems Biology …, 2022 - nature.com
… In this study, we evaluate drug−disease correlations at the regulome level for predicting …
To identify the commonality of different diseases, we applied Uniform Manifold Approximation …

miRegulome: a knowledge-base of miRNA regulomics and analysis

D Barh, B Kamapantula, N Jain, J Nalluri… - Scientific reports, 2015 - nature.com
The regulome of a miRNA essentially consists of modules such … The regulome also considers
associated diseases when a … different diseases, in which the effect of a certain disease on …

Activity-dependent regulome of human GABAergic neurons reveals new patterns of gene regulation and neurological disease heritability

GL Boulting, E Durresi, B Ataman, MA Sherman… - Nature …, 2021 - nature.com
… To ask how activity-regulated gene expression varies across the different cell types within
our cultures, we performed scRNAseq on hGN cultures after exposure to elevated levels of …

miRNA regulome in different atherosclerosis phenotypes

MS Nazarenko, IA Koroleva, AA Zarubin, AA Sleptcov - Molecular Biology, 2022 - Springer
The aim of this review is to summarize the results of the study of the miRNA regulome, …
in cells and organs that are the target of the disease in humans, ie atherosclerotic plaques, in …

The macrophage IRF8/IRF1 regulome is required for protection against infections and is associated with chronic inflammation

D Langlais, LB Barreiro, P Gros - Journal of Experimental Medicine, 2016 - rupress.org
… regions, we measured the level of H3K27Ac at the different clusters in chromatin from WT, …
the IRF8/IRF1 regulome and genetic loci contributing to susceptibility to inflammatory diseases

Genetics of the human microglia regulome refines Alzheimer's disease risk loci

R Kosoy, JF Fullard, B Zeng, J Bendl, P Dong… - Nature …, 2022 - nature.com
… We binned the interaction matrix at different resolutions and corrected it with iterative
correction for downstream analysis 58 . All Hi-C QC metrics are summarized in Supplementary …

Individuality and variation of personal regulomes in primary human T cells

K Qu, LC Zaba, PG Giresi, R Li, M Longmire, YH Kim… - Cell systems, 2015 - cell.com
… reference for comparing disease-associated regulomes. … variation in the T-cell regulome,
because it emerged as the most … Top: differential TF occupancy, defined as the TF occupancy …