… To evaluate the overall quality of the loci defined by the physical CGI Library, we calculated
two metrics, the G + C content and CpG dinucleotide frequency, and compared this to the …

… To evaluate the accuracy of CpGcluster and compare it to other programs, we assembled
a set of test sequences on the basis of an experimental CGI library [33]. This physical library …

… PSO predicts CpG islands among the CpG island candidates based on the GGF relaxed
CpG island criteria. Here we provide an example to illustrate how the ClusterPSO works, with …

… CpG sites (“non-CpG enzymes”) generates oligonucleosomes derived from bulk, nonisland
chromatin. We wished to compare the properties of CpG island … random from a library of NN …

… : the CpG island fraction, representing 1 to 2% of the total genome and containing all the
sites that are consistently nonmethylated at all stages of development; and the remaining 98% …

… That such features exist is evident from the example of CpG islands, originally defined as …
We look critically at CpG island biology in the context of the more detailed genome …

… Numerous computational methods are being developed to detect the CpG-… CpG detection
methods that utilize clustering, patterns and physical-distance like parameters for CpG island …

… for and describe CpG islands, and we … CpG islands not located within the promoters of
genes. This more rigorous description of a CpG island might be used to better define an island for …

… CpG islands (CGIs) play a fundamental role in genome … algorithm for detecting CGIs, called
CpG Island Finder (CpGIF), … Five public tools for CpG island searching are used to compare …

… of CpG island libraries is that all clones in the library are represented equally, in contrast to
cDNA libraries, in … Interestingly, the CpG island clones appear to contain very low numbers of …