microRNA target predictions in animals

N Rajewsky - Nature genetics, 2006 - nature.com
… Current miRNA target predictions A new generation of miRNA target predictions emerged
in 2005, mainly based on systematic target-site mutation experiments 15 and more extensive …

MicroRNA target prediction tools for animals: Where we are at and where we are going to-A systematic review

RMMW Feitosa, P Prieto-Oliveira, H Brentani… - … Biology and Chemistry, 2022 - Elsevier
miRNA target prediction in animals, bringing the currently publicly available miRNA-mRNA
prediction … and unique tools created for miRNA target prediction, not including databases or …

Combinatorial microRNA target predictions

A Krek, D Grün, MN Poy, R Wolf, L Rosenberg… - Nature …, 2005 - nature.com
… and for combinations of microRNAs. We find that vertebrate microRNAs target, on average,
roughly … Our data suggest that most animal microRNAs recognize targets in genomic DNA by …

Prediction of both conserved and nonconserved microRNA targets in animals

X Wang, IM El Naqa - Bioinformatics, 2008 - academic.oup.com
Animal miRNAs have limited sequence complementarity to their gene targets, … target
prediction models with high specificity. Results: Here we present a new miRNA target prediction

Animal microRNA target prediction using diverse sequence-specific determinants

Y Zheng, W Zhang - Journal of Bioinformatics and Computational …, 2010 - World Scientific
… for improving miRNA target prediction. We develop a new miRNA target prediction algorithm,
… We evaluate the performance of our algorithm on 720 known animal miRNA:target pairs in …

Computational prediction and experimental validation of evolutionarily conserved microRNA target genes in bilaterian animals

K Takane, K Fujishima, Y Watanabe, A Sato, N Saito… - BMC genomics, 2010 - Springer
… information was efficient in extracting evolutionarily conserved miRNA target-gene candidates.
Our findings reveal that miRNA target sites were conserved among various species, and …

Comprehensive overview and assessment of computational prediction of microRNA targets in animals

X Fan, L Kurgan - Briefings in bioinformatics, 2015 - academic.oup.com
… We observe that these reviews summarized the latest miRNA target predictors at the time
of their publication and compared or at least described the methodology used by these …

Computational prediction of disease microRNAs in domestic animals

T Buza, M Arick, H Wang, DG Peterson - BMC Research Notes, 2014 - Springer
… The main objective of our study was to identify animal miRNA homologs of published … and
animal miRNA resources, we identified potential disease-related miRNAs in domestic animals

TarBase: A comprehensive database of experimentally supported animal microRNA targets

P Sethupathy, B Corda, AG Hatzigeorgiou - rna, 2006 - rnajournal.cshlp.org
… to assess features of miRNA targeting that will be useful for the next generation of target
prediction programs. TarBase can be accessed at http://www.diana.pcbi.upenn.edu/tarbase. …

[HTML][HTML] Prediction methods for microRNA targets in bilaterian animals: Toward a better understanding by biologists

A Quillet, Y Anouar, T Lecroq, C Dubessy - Computational and Structural …, 2021 - Elsevier
… The discrepancies complicate the choice of the tool for miRNA target prediction. To provide
… of miRNA-target interactions in bilaterian animals, describe the prediction models currently …