Graph kernels

KM Borgwardt - 2007 - edoc.ub.uni-muenchen.de
As new graph structured data is constantly being generated, learning and data mining on
graphs have become a challenge in application areas such as molecular biology …

Grakel: A graph kernel library in python

G Siglidis, G Nikolentzos, S Limnios, C Giatsidis… - Journal of Machine …, 2020 - jmlr.org
The problem of accurately measuring the similarity between graphs is at the core of many
applications in a variety of disciplines. Graph kernels have recently emerged as a promising …

[PDF][PDF] Graph kernels

SVN Vishwanathan, NN Schraudolph, R Kondor… - The Journal of Machine …, 2010 - jmlr.org
We present a unified framework to study graph kernels, special cases of which include the
random walk (Gärtner et al., 2003; Borgwardt et al., 2005) and marginalized (Kashima et al …

Near-optimal supervised feature selection among frequent subgraphs

M Thoma, H Cheng, A Gretton, J Han, HP Kriegel… - Proceedings of the 2009 …, 2009 - SIAM
Graph classification is an increasingly important step in numerous application domains,
such as function prediction of molecules and proteins, computerised scene analysis, and …

Graph kernels: State-of-the-art and future challenges

K Borgwardt, E Ghisu, F Llinares-López… - … and Trends® in …, 2020 - nowpublishers.com
Graph-structured data are an integral part of many application domains, including
chemoinformatics, computational biology, neuroimaging, and social network analysis. Over …

Retgk: Graph kernels based on return probabilities of random walks

Z Zhang, M Wang, Y Xiang… - Advances in Neural …, 2018 - proceedings.neurips.cc
Graph-structured data arise in wide applications, such as computer vision, bioinformatics,
and social networks. Quantifying similarities among graphs is a fundamental problem. In this …

Graph kernels: A survey

G Nikolentzos, G Siglidis, M Vazirgiannis - Journal of Artificial Intelligence …, 2021 - jair.org
Graph kernels have attracted a lot of attention during the last decade, and have evolved into
a rapidly developing branch of learning on structured data. During the past 20 years, the …

[PDF][PDF] Weisfeiler-lehman graph kernels.

N Shervashidze, P Schweitzer, EJ Van Leeuwen… - Journal of Machine …, 2011 - jmlr.org
In this article, we propose a family of efficient kernels for large graphs with discrete node
labels. Key to our method is a rapid feature extraction scheme based on the Weisfeiler …

Fast random walk graph kernel

U Kang, H Tong, J Sun - Proceedings of the 2012 SIAM international …, 2012 - SIAM
Random walk graph kernel has been used as an important tool for various data mining tasks
including classification and similarity computation. Despite its usefulness, however, it suffers …

graphkernels: R and Python packages for graph comparison

M Sugiyama, ME Ghisu, F Llinares-López… - …, 2018 - academic.oup.com
Measuring the similarity of graphs is a fundamental step in the analysis of graph-structured
data, which is omnipresent in computational biology. Graph kernels have been proposed as …