Strategies for performing dynamic gene perturbation experiments in flowers

DS Ó'Maoiléidigh, E Graciet, F Wellmer - Bio-protocol, 2016 - bio-protocol.org
Dissecting the gene regulatory networks (GRNs) underlying developmental processes is a
central goal in biology. The characterization of the GRNs underlying flower development has …

Gene network analysis of Arabidopsis thaliana flower development through dynamic gene perturbations

DS Ó'Maoiléidigh, B Thomson, A Raganelli… - The Plant …, 2015 - Wiley Online Library
Understanding how flowers develop from undifferentiated stem cells has occupied
developmental biologists for decades. Key to unraveling this process is a detailed …

Reshaping the epigenetic landscape during early flower development: induction of attractor transitions by relative differences in gene decay rates

J Davila-Velderrain, C Villarreal… - BMC systems biology, 2015 - Springer
Background Gene regulatory network (GRN) dynamical models are standard systems
biology tools for the mechanistic understanding of developmental processes and are …

Genome‐wide mapping of transcription factor binding reveals developmental process integration and a fresh look at evolutionary dynamics

L Yant - American Journal of Botany, 2012 - Wiley Online Library
How does evolution forge adaptive responses? Are many changes required or few? Just
how complex are the transcriptional networks that control development? Diverse questions …

Characterization of gene regulatory networks in plants using new methods and data types

K Vandepoele, K Kaufmann - Plant Gene Regulatory Networks: Methods …, 2023 - Springer
A major question in plant biology is to understand how plant growth, development, and
environmental responses are controlled and coordinated by the activities of regulatory …

Gene regulatory network models for floral organ determination

E Azpeitia, J Davila-Velderrain, C Villarreal… - … : Methods and protocols, 2014 - Springer
Understanding how genotypes map unto phenotypes implies an integrative understanding
of the processes regulating cell differentiation and morphogenesis, which comprise …

[图书][B] Plant Gene Regulatory Networks

K Kaufmann, B Mueller-Roeber - 2023 - Springer
Plant development and environmental responses require the coordinated, orchestrated, and
often cell-type-specific activities of many gene products. The complex regulatory …

Architecture of gene regulatory networks controlling flower development in Arabidopsis thaliana

D Chen, W Yan, LY Fu, K Kaufmann - Nature communications, 2018 - nature.com
Floral homeotic transcription factors (TFs) act in a combinatorial manner to specify the organ
identities in the flower. However, the architecture and the function of the gene regulatory …

The end of innocence: flowering networks explode in complexity

D Posé, L Yant, M Schmid - Current opinion in plant biology, 2012 - Elsevier
Substantial recent advances in genome-scale transcription factor target mapping have
provided a fresh view of the gene networks governing developmental transitions. In …

Genome-Wide Analysis of Gene Expression during Early Arabidopsis Flower Development

F Wellmer, M Alves-Ferreira, A Dubois… - PLoS …, 2006 - journals.plos.org
Detailed information about stage-specific changes in gene expression is crucial for the
understanding of the gene regulatory networks underlying development. Here, we describe …