F Zhao, C Yu, Y Liu - Nucleic acids research, 2017 - academic.oup.com
Codon usage biases are found in all eukaryotic and prokaryotic genomes and have been proposed to regulate different aspects of translation process. Codon optimality has been …
D Chu, E Kazana, N Bellanger, T Singh, MF Tuite… - The EMBO …, 2014 - embopress.org
Synonymous codons encode the same amino acid, but differ in other biophysical properties. The evolutionary selection of codons whose properties are optimal for a cell generates the …
The advent of ribosome profiling and other tools to probe mRNA translation has revealed that codon bias—the uneven use of synonymous codons in the transcriptome—serves as a …
Y Liu, Q Yang, F Zhao - Annual review of biochemistry, 2021 - annualreviews.org
Codon usage bias, the preference for certain synonymous codons, is found in all genomes. Although synonymous mutations were previously thought to be silent, a large body of …
Y Liu - Cell Communication and Signaling, 2020 - Springer
The genetic code is degenerate, and most amino acids are encoded by two to six synonymous codons. Codon usage bias, the preference for certain synonymous codons, is a …
W Qian, JR Yang, NM Pearson, C Maclean… - PLoS genetics, 2012 - journals.plos.org
Cellular efficiency in protein translation is an important fitness determinant in rapidly growing organisms. It is widely believed that synonymous codons are translated with unequal …
Rapid cell growth demands fast protein translational elongation to alleviate ribosome shortage. However, speedy elongation undermines translational accuracy because of a …
Codon usage bias is a universal feature of eukaryotic and prokaryotic genomes and plays an important role in regulating gene expression levels. A major role of codon usage is …
I Frumkin, MJ Lajoie, CJ Gregg… - Proceedings of the …, 2018 - National Acad Sciences
Although the genetic code is redundant, synonymous codons for the same amino acid are not used with equal frequencies in genomes, a phenomenon termed “codon usage bias.” …