Codon usage influences the local rate of translation elongation to regulate co-translational protein folding

CH Yu, Y Dang, Z Zhou, C Wu, F Zhao, MS Sachs… - Molecular cell, 2015 - cell.com
Codon usage bias is a universal feature of eukaryotic and prokaryotic genomes and has
been proposed to regulate translation efficiency, accuracy, and protein folding based on the …

Codon usage regulates protein structure and function by affecting translation elongation speed in Drosophila cells

F Zhao, C Yu, Y Liu - Nucleic acids research, 2017 - academic.oup.com
Codon usage biases are found in all eukaryotic and prokaryotic genomes and have been
proposed to regulate different aspects of translation process. Codon optimality has been …

Translation elongation can control translation initiation on eukaryotic mRNA s

D Chu, E Kazana, N Bellanger, T Singh, MF Tuite… - The EMBO …, 2014 - embopress.org
Synonymous codons encode the same amino acid, but differ in other biophysical properties.
The evolutionary selection of codons whose properties are optimal for a cell generates the …

Codon optimality, bias and usage in translation and mRNA decay

G Hanson, J Coller - Nature reviews Molecular cell biology, 2018 - nature.com
The advent of ribosome profiling and other tools to probe mRNA translation has revealed
that codon bias—the uneven use of synonymous codons in the transcriptome—serves as a …

Synonymous but not silent: the codon usage code for gene expression and protein folding

Y Liu, Q Yang, F Zhao - Annual review of biochemistry, 2021 - annualreviews.org
Codon usage bias, the preference for certain synonymous codons, is found in all genomes.
Although synonymous mutations were previously thought to be silent, a large body of …

A code within the genetic code: codon usage regulates co-translational protein folding

Y Liu - Cell Communication and Signaling, 2020 - Springer
The genetic code is degenerate, and most amino acids are encoded by two to six
synonymous codons. Codon usage bias, the preference for certain synonymous codons, is a …

Balanced codon usage optimizes eukaryotic translational efficiency

W Qian, JR Yang, NM Pearson, C Maclean… - PLoS genetics, 2012 - journals.plos.org
Cellular efficiency in protein translation is an important fitness determinant in rapidly growing
organisms. It is widely believed that synonymous codons are translated with unequal …

Codon-by-codon modulation of translational speed and accuracy via mRNA folding

JR Yang, X Chen, J Zhang - PLoS biology, 2014 - journals.plos.org
Rapid cell growth demands fast protein translational elongation to alleviate ribosome
shortage. However, speedy elongation undermines translational accuracy because of a …

eRF1 mediates codon usage effects on mRNA translation efficiency through premature termination at rare codons

Q Yang, CH Yu, F Zhao, Y Dang, C Wu… - Nucleic acids …, 2019 - academic.oup.com
Codon usage bias is a universal feature of eukaryotic and prokaryotic genomes and plays
an important role in regulating gene expression levels. A major role of codon usage is …

Codon usage of highly expressed genes affects proteome-wide translation efficiency

I Frumkin, MJ Lajoie, CJ Gregg… - Proceedings of the …, 2018 - National Acad Sciences
Although the genetic code is redundant, synonymous codons for the same amino acid are
not used with equal frequencies in genomes, a phenomenon termed “codon usage bias.” …