A tensor decomposition model for longitudinal microbiome studies

S Ma, H Li - The Annals of Applied Statistics, 2023 - projecteuclid.org
A tensor decomposition model for longitudinal microbiome studies Page 1 The Annals of
Applied Statistics 2023, Vol. 17, No. 2, 1105–1126 https://doi.org/10.1214/22-AOAS1661 © …

Supervised low-rank approximation of high-dimensional multivariate functional data via tensor decomposition

MS Alam, AM Staicu, P Shi - arXiv preprint arXiv:2409.13819, 2024 - arxiv.org
Motivated by the challenges of analyzing high-dimensional ($ p\gg n $) sequencing data
from longitudinal microbiome studies, where samples are collected at multiple time points …

Tensor sufficient dimension reduction

W Zhong, X Xing, K Suslick - Wiley Interdisciplinary Reviews …, 2015 - Wiley Online Library
Tensor is a multiway array. With the rapid development of science and technology in the
past decades, large amount of tensor observations are routinely collected, processed, and …

[PDF][PDF] Testing hypotheses about the microbiome using the linear decomposition model

YJ Hu, GA Satten - bioRxiv, 2019 - academia.edu
Background: Distance-based methods for analyzing microbiome data are typically restricted
to testing the global hypothesis of microbiome effect, but do not test the contribution of …

Time-Informed Dimensionality Reduction for Longitudinal Microbiome Studies

P Shi, C Martino, R Han, S Janssen, G Buck, M Serrano… - bioRxiv, 2023 - biorxiv.org
Complex dynamics of microbial communities underlie their essential roles in health and
disease, but our understanding of these dynamics remains incomplete. To bridge this gap …

Testing hypotheses about the microbiome using the linear decomposition model (LDM)

YJ Hu, GA Satten - Bioinformatics, 2020 - academic.oup.com
Motivation Methods for analyzing microbiome data generally fall into one of two groups: tests
of the global hypothesis of any microbiome effect, which do not provide any information on …

Dimensionality reduction of longitudinal'omics data using modern tensor factorizations

U Mor, Y Cohen, R Valdés-Mas… - PLoS computational …, 2022 - journals.plos.org
Longitudinal'omics analytical methods are extensively used in the evolving field of precision
medicine, by enabling 'big data'recording and high-resolution interpretation of complex …

Tensor Decomposition via Variational Auto-Encoder

B Liu, Z Xu, Y Li - arXiv preprint arXiv:1611.00866, 2016 - arxiv.org
Tensor decomposition is an important technique for capturing the high-order interactions
among multiway data. Multi-linear tensor composition methods, such as the Tucker …

Tensor‐structured decomposition improves systems serology analysis

ZC Tan, MC Murphy, HS Alpay, SD Taylor… - Molecular systems …, 2021 - embopress.org
Abstract Systems serology provides a broad view of humoral immunity by profiling both the
antigen‐binding and Fc properties of antibodies. These studies contain structured …

Tensor Decomposition with Unaligned Observations

R Tang, T Kolda, AR Zhang - arXiv preprint arXiv:2410.14046, 2024 - arxiv.org
This paper presents a canonical polyadic (CP) tensor decomposition that addresses
unaligned observations. The mode with unaligned observations is represented using …