Identification of novel HIV 1-protease inhibitors: application of ligand and structure based pharmacophore mapping and virtual screening

D Yadav, S Paliwal, R Yadav, M Pal, A Pandey - PloS one, 2012 - journals.plos.org
A combined ligand and structure-based drug design approach provides a synergistic
advantage over either methods performed individually. Present work bestows a good …

Exploration of the structural requirements of HIV-protease inhibitors using pharmacophore, virtual screening and molecular docking approaches for lead identification

MA Islam, TS Pillay - Journal of Molecular Graphics and Modelling, 2015 - Elsevier
Pharmacoinformatics approaches are widely used in the field of drug discovery as it saves
time, investment and animal sacrifice. In the present study, pharmacore-based virtual …

Multistage virtual screening and identification of novel HIV-1 protease inhibitors by integrating SVM, shape, pharmacophore and docking methods

Y Wei, J Li, Z Chen, F Wang, W Huang, Z Hong… - European journal of …, 2015 - Elsevier
The HIV-1 protease has proven to be a crucial component of the HIV replication machinery
and a reliable target for anti-HIV drug discovery. In this study, we applied an optimized …

Pocket-to-Lead: Structure-Based De Novo Design of Novel Non-peptidic HIV-1 Protease Inhibitors Using the Ligand Binding Pocket as a Template

E Kojima, A Iimuro, M Nakajima, H Kinuta… - Journal of Medicinal …, 2022 - ACS Publications
A novel strategy for lead identification that we have dubbed the “Pocket-to-Lead” strategy is
demonstrated using HIV-1 protease as a model target. Sometimes, it is difficult to obtain hit …

Structure based drug design for HIV protease: from molecular modeling to cheminformatics

P Volarath, RW Harrison… - Current topics in medicinal …, 2007 - ingentaconnect.com
Significant progress over the past decade in virtual representations of molecules and their
physicochemical properties has produced new drugs from virtual screening of the structures …

Seeking novel leads through structure-based pharmacophore design

LS Fisher, OF Güner - Journal of the Brazilian Chemical Society, 2002 - SciELO Brasil
We developed a procedure that identifies" novel" biologically active compounds that are
expected to be distinct from known active compounds with respect to specificity and other …

P1 and P1′ para-fluoro phenyl groups show enhanced binding and favorable predicted pharmacological properties: Structure-based virtual screening of extended …

RS Yedidi, Z Liu, IA Kovari, PM Woster… - Journal of Molecular …, 2014 - Elsevier
Crystal structure of multidrug-resistant (MDR) clinical isolate 769, human immunodeficiency
virus type-1 (HIV-1) protease in complex with lopinavir (LPV)(PDB ID: 1RV7) showed altered …

Molecular docking and 3D-QSAR studies of HIV-1 protease inhibitors

VM Khedkar, PK Ambre, J Verma, MS Shaikh… - Journal of molecular …, 2010 - Springer
HIV-1 protease is an obligatory enzyme in the replication process of the HIV virus. The
abundance of structural information on HIV-1PR has made the enzyme an attractive target …

[PDF][PDF] Molecular docking studies and comparative binding mode analysis of FDA approved HIV protease inhibitors

PK Deb, A Junaid, D El-Rabie, TY Hon… - Asian Journal of …, 2014 - researchgate.net
The HIV protease enzyme (maturation enzyme) is one of the most promising therapeutic
targets for the treatment of AIDS. Due to the mutation in the virus, there is always room for …

Selection of molecular descriptors with artificial intelligence for the understanding of HIV-1 protease peptidomimetic inhibitors-activity

S Sirois, CM Tsoukas, KC Chou, D Wei… - Medicinal …, 2005 - ingentaconnect.com
Quantitative Structure Activity Relationship (QSAR) techniques are used routinely by
computational chemists in drug discovery and development to analyze datasets of …