Massive and parallel expression profiling using microarrayed single-cell sequencing

S Vickovic, PL Ståhl, F Salmén, S Giatrellis… - Nature …, 2016 - nature.com
Single-cell transcriptome analysis overcomes problems inherently associated with
averaging gene expression measurements in bulk analysis. However, single-cell analysis is …

MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data

G Finak, A McDavid, M Yajima, J Deng, V Gersuk… - Genome biology, 2015 - Springer
Single-cell transcriptomics reveals gene expression heterogeneity but suffers from
stochastic dropout and characteristic bimodal expression distributions in which expression is …

Smart-seq2 for sensitive full-length transcriptome profiling in single cells

S Picelli, ÅK Björklund, OR Faridani, S Sagasser… - Nature …, 2013 - nature.com
Single-cell gene expression analyses hold promise for characterizing cellular heterogeneity,
but current methods compromise on either the coverage, the sensitivity or the throughput …

Single-cell RNA-seq by multiple annealing and tailing-based quantitative single-cell RNA-seq (MATQ-Seq)

K Sheng, C Zong - Single Cell Methods: Sequencing and Proteomics, 2019 - Springer
Single-cell technologies have emerged as advanced tools to study various biological
processes that demand the single cell resolution. To detect subtle heterogeneity in the …

Profiling of single‐cell transcriptomes

W Chen, V Gardeux, A Meireles‐Filho… - Current protocols in …, 2017 - Wiley Online Library
Complex biological systems are composed of multiple cell types whose transcriptional
activity can vary due to differences in cell state, environmental stimulation, or intrinsic …

Single-cell mRNA quantification and differential analysis with Census

X Qiu, A Hill, J Packer, D Lin, YA Ma, C Trapnell - Nature methods, 2017 - nature.com
Single-cell gene expression studies promise to reveal rare cell types and cryptic states, but
the high variability of single-cell RNA-seq measurements frustrates efforts to assay …

Integrated genome and transcriptome sequencing of the same cell

SS Dey, L Kester, B Spanjaard, M Bienko… - Nature …, 2015 - nature.com
Single-cell genomics and single-cell transcriptomics have emerged as powerful tools to
study the biology of single cells at a genome-wide scale. However, a major challenge is to …

Microfluidic single-cell whole-transcriptome sequencing

AM Streets, X Zhang, C Cao, Y Pang… - Proceedings of the …, 2014 - National Acad Sciences
Single-cell whole-transcriptome analysis is a powerful tool for quantifying gene expression
heterogeneity in populations of cells. Many techniques have, thus, been recently developed …

Opportunities and tradeoffs in single-cell transcriptomic technologies

MI Conte, A Fuentes-Trillo, CD Conde - Trends in Genetics, 2024 - cell.com
Recent technological and algorithmic advances enable single-cell transcriptomic analysis
with remarkable depth and breadth. Nonetheless, a persistent challenge is the compromise …

Quantitative assessment of single-cell RNA-sequencing methods

AR Wu, NF Neff, T Kalisky, P Dalerba, B Treutlein… - Nature …, 2014 - nature.com
Interest in single-cell whole-transcriptome analysis is growing rapidly, especially for profiling
rare or heterogeneous populations of cells. We compared commercially available single-cell …