Computational drug discovery with dyadic positive-unlabeled learning

Y Liu, S Qiu, P Zhang, P Gong, F Wang, G Xue… - Proceedings of the 2017 …, 2017 - SIAM
Abstract Computational Drug Discovery, which uses computational techniques to facilitate
and improve the drug discovery process, has aroused considerable interests in recent years …

Screening drug-target interactions with positive-unlabeled learning

L Peng, W Zhu, B Liao, Y Duan, M Chen, Y Chen… - Scientific reports, 2017 - nature.com
Identifying drug-target interaction (DTI) candidates is crucial for drug repositioning. However,
usually only positive DTIs are deposited in known databases, which challenges …

Positive-unlabeled learning for inferring drug interactions based on heterogeneous attributes

PN Hameed, K Verspoor, S Kusljic, S Halgamuge - BMC bioinformatics, 2017 - Springer
Background Investigating and understanding drug-drug interactions (DDIs) is important in
improving the effectiveness of clinical care. DDIs can occur when two or more drugs are …

DDI-PULearn: a positive-unlabeled learning method for large-scale prediction of drug-drug interactions

Y Zheng, H Peng, X Zhang, Z Zhao, X Gao, J Li - BMC bioinformatics, 2019 - Springer
Abstract Background Drug-drug interactions (DDIs) are a major concern in patients'
medication. It's unfeasible to identify all potential DDIs using experimental methods which …

Predicting drug–target interaction using positive-unlabeled learning

W Lan, J Wang, M Li, J Liu, Y Li, FX Wu, Y Pan - Neurocomputing, 2016 - Elsevier
Identifying interactions between drug compounds and target proteins is an important
process in drug discovery. It is time-consuming and expensive to determine interactions …

Drug repositioning through integration of prior knowledge and projections of drugs and diseases

P Xuan, Y Cao, T Zhang, X Wang, S Pan… - Bioinformatics, 2019 - academic.oup.com
Motivation Identifying and developing novel therapeutic effects for existing drugs contributes
to reduction of drug development costs. Most of the previous methods focus on integration of …

[HTML][HTML] Inferring drug-disease associations by a deep analysis on drug and disease networks

L Chen, K Chen, B Zhou - Mathematical Biosciences and …, 2023 - aimspress.com
Drugs, which treat various diseases, are essential for human health. However, developing
new drugs is quite laborious, time-consuming, and expensive. Although investments into …

MULGA, a unified multi-view graph autoencoder-based approach for identifying drug–protein interaction and drug repositioning

J Ma, C Li, Y Zhang, Z Wang, S Li, Y Guo… - …, 2023 - academic.oup.com
Motivation Identifying drug–protein interactions (DPIs) is a critical step in drug repositioning,
which allows reuse of approved drugs that may be effective for treating a different disease …

[PDF][PDF] DT-ML: Drug-Target Metric Learning.

D Pogány, P Antal - BIOINFORMATICS, 2023 - scitepress.org
The challenges of modern drug discovery motivate the use of machine learning-based
methods, such as predicting drug-target interactions or novel indications for already …

MiRAGE: mining relationships for advanced generative evaluation in drug repositioning

A Hassanali Aragh, P Givehchian… - Briefings in …, 2024 - academic.oup.com
Motivation Drug repositioning, the identification of new therapeutic uses for existing drugs, is
crucial for accelerating drug discovery and reducing development costs. Some methods rely …