Correlations between the compositional properties of human genes, codon usage, and amino acid composition of proteins

G D'Onofrio, D Mouchiroud, B Aïssani, C Gautier… - Journal of molecular …, 1991 - Springer
We have analyzed the correlation that exists between the GC levels of third and first or
second codon position for about 1400 human coding sequences. The linear relationship that …

The compositional properties of human genes

B Aïssani, G D'Onofrio, D Mouchiroud… - Journal of molecular …, 1991 - Springer
The present work represents the first attempt to study in greater detail previously proposed
compositional correlations in genomes, based on a body of additional data relating to gene …

Evident diversity of codon usage patterns of human genes with respect to chromosome banding patterns and chromosome numbers; relation between nucleotide …

T Ikemura, K Wada - Nucleic acids research, 1991 - academic.oup.com
The sequences of the human genome compiled in DNA databases are now about 10
megabase pairs (Mb), and thus the size of the sequences is several times the average size …

Codon usage tabulated from the GenBank genetic sequence data

K Wada, Y Wada, H Doi, F Ishibashi… - Nucleic acids …, 1991 - ncbi.nlm.nih.gov
In 1980 and 1981, Grantham and his colleague (1, 2) reported the codon usages in a total of
161 protein genes in this journal, and in 1986, 1988 and 1989, we reported those in all …

The compositional distribution of coding sequences and DNA molecules in humans and murids

D Mouchiroud, C Gautier, G Bernardi - Journal of molecular evolution, 1988 - Springer
The compositional distributions of coding sequences and DNA molecules (in the 50-100-kb
range) are remarkably narrower in murids (rat and mouse) compared to humans (as well as …

Relationship between G+ C in silent sites of codons and amino acid composition of human proteins

DW Collins, TH Jukes - Journal of molecular evolution, 1993 - Springer
We have investigated the relationship between the G+ C content of silent (synonymous)
sites in codons and the amino acid composition of encoded proteins for approximately 1,600 …

Codon usage tabulated from the GenBank genetic sequence data

S Aota, T Gojobori, F Ishibashi, T Maruyama… - Nucleic acids …, 1988 - ncbi.nlm.nih.gov
Nucleic Acids Research was calculated by adding for each codon (Table 2). The number of
genes summed for each organisms is given in the row designated as No. GENES, and the …

Codon catalog usage and the genome hypothesis

R Grantham, C Gautier, M Gouy, R Mercier… - Nucleic acids …, 1980 - academic.oup.com
Frequencies for each of the 61 amino acid codes have been determined in every published
mRNA sequence of 50 or more codons. The frequencies are shown for each kind of genome …

Codon usage and genome composition

G Bernardi, G Bernardi - Journal of molecular evolution, 1985 - Springer
The GC levels of codon third positions from 49 genomes coveering a wide phylogenetic
range are linearly correlated with the GC levels of the corresponding genomes. Three …

[PDF][PDF] Analysis of codon usage

JF Peden - 2000 - Citeseer
The genetic code uses 64 codons to represent the 20 standard amino acids and the
translation termination signal. Each codon is recognised by a subset of a cell's transfer …