Soil viruses are underexplored players in ecosystem carbon processing

G Trubl, HB Jang, S Roux, JB Emerson, N Solonenko… - …, 2018 - Am Soc Microbiol
Rapidly thawing permafrost harbors∼ 30 to 50% of global soil carbon, and the fate of this
carbon remains unknown. Microorganisms will play a central role in its fate, and their viruses …

Host-linked soil viral ecology along a permafrost thaw gradient

JB Emerson, S Roux, JR Brum, B Bolduc… - Nature …, 2018 - nature.com
Climate change threatens to release abundant carbon that is sequestered at high latitudes,
but the constraints on microbial metabolisms that mediate the release of methane and …

Diversity in the soil virosphere: to infinity and beyond?

S Roux, JB Emerson - Trends in Microbiology, 2022 - cell.com
Viruses are key members of Earth's microbiomes, shaping microbial community composition
and metabolism. Here, we describe recent advances in'soil viromics', that is, virus-focused …

Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils

G Trubl, S Roux, N Solonenko, YF Li, B Bolduc… - PeerJ, 2019 - peerj.com
Soils impact global carbon cycling and their resident microbes are critical to their
biogeochemical processing and ecosystem outputs. Based on studies in marine systems …

Soil viruses: a new hope

JB Emerson - Msystems, 2019 - Am Soc Microbiol
As abundant members of microbial communities, viruses impact microbial mortality, carbon
and nutrient cycling, and food web dynamics. Although most of our information about viral …

Coming-of-age characterization of soil viruses: a user's guide to virus isolation, detection within metagenomes, and viromics

G Trubl, P Hyman, S Roux, ST Abedon - Soil Systems, 2020 - mdpi.com
The study of soil viruses, though not new, has languished relative to the study of marine
viruses. This is particularly due to challenges associated with separating virions from …

Viromes outperform total metagenomes in revealing the spatiotemporal patterns of agricultural soil viral communities

C Santos-Medellin, LA Zinke, AM Ter Horst… - The ISME …, 2021 - academic.oup.com
Viruses are abundant yet understudied members of soil environments that influence
terrestrial biogeochemical cycles. Here, we characterized the dsDNA viral diversity in …

Metatranscriptomic reconstruction reveals RNA viruses with the potential to shape carbon cycling in soil

EP Starr, EE Nuccio, J Pett-Ridge… - Proceedings of the …, 2019 - National Acad Sciences
Viruses impact nearly all organisms on Earth, with ripples of influence in agriculture, health,
and biogeochemical processes. However, very little is known about RNA viruses in an …

Integrating viruses into soil food web biogeochemistry

C Carreira, C Lønborg, B Acharya, L Aryal… - Nature …, 2024 - nature.com
The soil microbiome is recognized as an essential component of healthy soils. Viruses are
also diverse and abundant in soils, but their roles in soil systems remain unclear. Here we …

Active virus-host interactions at sub-freezing temperatures in Arctic peat soil

G Trubl, JA Kimbrel, J Liquet-Gonzalez, EE Nuccio… - Microbiome, 2021 - Springer
Background Winter carbon loss in northern ecosystems is estimated to be greater than the
average growing season carbon uptake and is primarily driven by microbial decomposers …