Quantifying differences in the tempo of human immunodeficiency virus type 1 subtype evolution
Human immunodeficiency virus type 1 (HIV-1) genetic diversity, due to its high evolutionary
rate, has long been identified as a main cause of problems in the development of an efficient …
rate, has long been identified as a main cause of problems in the development of an efficient …
Recent evolutionary history of human immunodeficiency virus type 1 subtype B: reconstruction of epidemic onset based on sequence distances to the common …
VV Lukashov, J Goudsmit - Journal of Molecular Evolution, 2002 - Springer
We obtained and studied HIV-1 sequences with a known sampling year from three
outbreaks of the HIV-1 epidemic: 141 env V3 (270 nt) sampled between 1984 and 1992 and …
outbreaks of the HIV-1 epidemic: 141 env V3 (270 nt) sampled between 1984 and 1992 and …
The substitution rate of HIV-1 subtypes: a genomic approach
JÁ Patiño-Galindo, F Gonzalez-Candelas - Virus Evolution, 2017 - academic.oup.com
HIV-1M causes most infections in the AIDS pandemic. Its genetic diversity is defined by nine
pure subtypes and more than sixty recombinant forms. We have performed a comparative …
pure subtypes and more than sixty recombinant forms. We have performed a comparative …
Origin and evolutionary history of HIV-1 subtype C in Brazil
G Bello, CPB Passaes, ML Guimaraes, RS Lorete… - Aids, 2008 - journals.lww.com
Objective: To investigate the origin and to reconstruct the onset date of the HIV-1 subtype C
epidemic in Brazil. Design: Three independent datasets of subtype C sequences isolated …
epidemic in Brazil. Design: Three independent datasets of subtype C sequences isolated …
Evidence for Heterogeneous Selective Pressures in the Evolution of the env Gene in Different Human Immunodeficiency Virus Type 1 Subtypes
SAA Travers, MJ O'Connell, GP McCormack… - Journal of …, 2005 - Am Soc Microbiol
Recent studies have demonstrated the emergence of human immunodeficiency virus type 1
(HIV-1) subtypes with various levels of fitness. Using heterogeneous maximum-likelihood …
(HIV-1) subtypes with various levels of fitness. Using heterogeneous maximum-likelihood …
Intrahost human immunodeficiency virus type 1 evolution is related to length of the immunocompetent period
VV Lukashov, CL Kuiken, J Goudsmit - Journal of Virology, 1995 - Am Soc Microbiol
The antigenic diversity threshold theory predicts that antigenic sites of human
immunodeficiency virus type 1, such as the V3 region of the external glycoprotein gp120 …
immunodeficiency virus type 1, such as the V3 region of the external glycoprotein gp120 …
Recombination confounds the early evolutionary history of human immunodeficiency virus type 1: subtype G is a circulating recombinant form
Human immunodeficiency virus type 1 (HIV-1) is classified in nine subtypes (A to D, F, G, H,
J, and K), a number of subsubtypes, and several circulating recombinant forms (CRFs). Due …
J, and K), a number of subsubtypes, and several circulating recombinant forms (CRFs). Due …
Evolution of the human immunodeficiency virus type 1 subtype-specific V3 domain is confined to a sequence space with a fixed distance to the subtype consensus
VV Lukashov, J Goudsmit - Journal of virology, 1997 - Am Soc Microbiol
Human immunodeficiency virus type 1 (HIV-1) strains can be separated into genetic
subtypes based on phylogenetic analysis of the envelope gene. Once it had been shown …
subtypes based on phylogenetic analysis of the envelope gene. Once it had been shown …
Intra-host evolutionary rates in HIV-1C env and gag during primary infection
Background HIV-1 nucleotide substitution rates are central for understanding the evolution
of HIV-1. Their accurate estimation is critical for analysis of viral dynamics, identification of …
of HIV-1. Their accurate estimation is critical for analysis of viral dynamics, identification of …
Unequal evolutionary rates in the human immunodeficiency virus type 1 (HIV-1) pandemic: the evolutionary rate of HIV-1 slows down when the epidemic rate …
ABSTRACT HIV-1 sequences in intravenous drug user (IDU) networks are highly
homogenous even after several years, while this is not observed in most sexual epidemics …
homogenous even after several years, while this is not observed in most sexual epidemics …