Single-molecule optical-trapping techniques to study molecular mechanisms of a replisome

B Sun, MD Wang - Methods in Enzymology, 2017 - Elsevier
The replisome is a multiprotein molecular machinery responsible for the replication of DNA.
It is composed of several specialized proteins each with dedicated enzymatic activities, and …

Motors, switches, and contacts in the replisome

SM Hamdan, CC Richardson - Annual review of biochemistry, 2009 - annualreviews.org
Replisomes are the protein assemblies that replicate DNA. They function as molecular
motors to catalyze template-mediated polymerization of nucleotides, unwinding of DNA, the …

Simultaneous single-molecule measurements of phage T7 replisome composition and function reveal the mechanism of polymerase exchange

JJ Loparo, AW Kulczyk… - Proceedings of the …, 2011 - National Acad Sciences
A complete understanding of the molecular mechanisms underlying the functioning of large,
multiprotein complexes requires experimental tools capable of simultaneously visualizing …

Assembling bacteriophage T7 leading-strand replisome for structural investigation

CY Lo, Y Gao - Methods in Enzymology, 2022 - Elsevier
Replicative helicase and polymerase form the leading-strand replisome that unwinds
parental DNA and performs continuous leading-strand DNA synthesis. Uncoupling of the …

Single-molecule studies of polymerase dynamics and stoichiometry at the bacteriophage T7 replication machinery

HJ Geertsema, AW Kulczyk… - Proceedings of the …, 2014 - National Acad Sciences
Replication of DNA plays a central role in transmitting hereditary information from cell to cell.
To achieve reliable DNA replication, multiple proteins form a stable complex, known as the …

Simultaneous real-time imaging of leading and lagging strand synthesis reveals the coordination dynamics of single replisomes

KE Duderstadt, HJ Geertsema, SA Stratmann… - Molecular cell, 2016 - cell.com
The molecular machinery responsible for DNA replication, the replisome, must efficiently
coordinate DNA unwinding with priming and synthesis to complete duplication of both …

Single-molecule insights into the dynamics of replicative helicases

RR Spinks, LM Spenkelink, NE Dixon… - Frontiers in Molecular …, 2021 - frontiersin.org
Helicases are molecular motors that translocate along single-stranded DNA and unwind
duplex DNA. They rely on the consumption of chemical energy from nucleotide hydrolysis to …

Dynamics of DNA replication loops reveal temporal control of lagging-strand synthesis

SM Hamdan, JJ Loparo, M Takahashi… - Biophysical …, 2009 - cell.com
In all organisms, the protein machinery responsible for the replication of DNA, the replisome,
is faced with a directionality problem. The antiparallel nature of duplex DNA permits the …

Hybrid methods reveal multiple flexibly linked DNA polymerases within the bacteriophage T7 replisome

JR Wallen, H Zhang, C Weis, W Cui, BM Foster… - Structure, 2017 - cell.com
The physical organization of DNA enzymes at a replication fork enables efficient copying of
two antiparallel DNA strands, yet dynamic protein interactions within the replication complex …

T7 replisome directly overcomes DNA damage

B Sun, M Pandey, JT Inman, Y Yang, M Kashlev… - Nature …, 2015 - nature.com
Cells and viruses possess several known 'restart'pathways to overcome lesions during DNA
replication. However, these 'bypass' pathways leave a gap in replicated DNA or require …