Dynamic chromatin technologies: from individual molecules to epigenomic regulation in cells

O Cuvier, B Fierz - Nature Reviews Genetics, 2017 - nature.com
The establishment and maintenance of chromatin states involves multiscale dynamic
processes integrating transcription factor and multiprotein effector dynamics, cycles of …

Understanding and engineering chromatin as a dynamical system across length and timescales

CP Johnstone, NB Wang, SA Sevier, KE Galloway - Cell Systems, 2020 - cell.com
Connecting the molecular structure and function of chromatin across length and timescales
remains a grand challenge to understanding and engineering cellular behaviors. Across five …

Interrogating epigenetic mechanisms with chemically customized chromatin

N Hananya, S Koren, TW Muir - Nature Reviews Genetics, 2024 - nature.com
Genetic and genomic techniques have proven incredibly powerful for identifying and
studying molecular players implicated in the epigenetic regulation of DNA-templated …

Chromatin as an expansive canvas for chemical biology

B Fierz, TW Muir - Nature chemical biology, 2012 - nature.com
Chromatin is extensively chemically modified and thereby acts as a dynamic signaling
platform controlling gene function. Chromatin regulation is integral to cell differentiation …

Emerging roles for chromatin as a signal integration and storage platform

AI Badeaux, Y Shi - Nature reviews Molecular cell biology, 2013 - nature.com
Cells of a multicellular organism, all containing nearly identical genetic information, respond
to differentiation cues in variable ways. In addition, cells are plastic, able to execute their …

Chromatin remodeling in development and differentiation

C Müller, A Leutz - Current opinion in genetics & development, 2001 - Elsevier
During development and differentiation, early inductive processes that influence cell fate at a
later stage leave marks at distinct gene loci that are maintained through several rounds of …

[HTML][HTML] Genome-wide chromatin state transitions associated with developmental and environmental cues

J Zhu, M Adli, JY Zou, G Verstappen, M Coyne… - Cell, 2013 - cell.com
Differences in chromatin organization are key to the multiplicity of cell states that arise from a
single genetic background, yet the landscapes of in vivo tissues remain largely uncharted …

The interplay of epigenetic marks during stem cell differentiation and development

Y Atlasi, HG Stunnenberg - Nature Reviews Genetics, 2017 - nature.com
Chromatin, the template for epigenetic regulation, is a highly dynamic entity that is constantly
reshaped during early development and differentiation. Epigenetic modification of chromatin …

Mapping chromatin modifications at the single cell level

CH Ludwig, L Bintu - Development, 2019 - journals.biologists.com
Understanding chromatin regulation holds enormous promise for controlling gene
regulation, predicting cellular identity, and developing diagnostics and cellular therapies …

Chromatin plasticity: a versatile landscape that underlies cell fate and identity

T Yadav, JP Quivy, G Almouzni - Science, 2018 - science.org
During development and throughout life, a variety of specialized cells must be generated to
ensure the proper function of each tissue and organ. Chromatin plays a key role in …