[PDF][PDF] Dissection of nucleosome positioning mechanisms by genome-wide in vitro reconstitution

N Krietenstein - 2017 - edoc.ub.uni-muenchen.de
The results of this work stem from the collaborative efforts of the labs from PD Dr. Philipp
Korber, Prof. B. Franklin Pugh, PhD., Prof. Craig L. Peterson, PhD., and Prof. Dr. Karl-Peter …

Mechanism For Nucleosome Organization Reconstituted Across A Eukaryotic Genome

M Wal - 2016 - etda.libraries.psu.edu
The eukaryotic genome is packaged into chromatin, which renders the DNA inaccessible to
DNA-templated cellular processes. These include DNA replication, repair, recombination …

Functional characterization of the Saccharomyces cerevisiae chromatin remodeler INO80

V Niebauer - 2020 - edoc.ub.uni-muenchen.de
Knowing the explicit locations of nucleosomes in a genome is a pre-requisite for
understanding the regulation of genes. Predominantly at regulatory active promoter sites …

Genome-wide in vitro reconstitution of yeast chromatin with in vivo-like nucleosome positioning

N Krietenstein, CJ Wippo, C Lieleg, P Korber - Methods in enzymology, 2012 - Elsevier
Recent genome-wide mapping of nucleosome positions revealed that well-positioned
nucleosomes are pervasive across eukaryotic genomes, especially in important regulatory …

Genomic nucleosome organization reconstituted with pure proteins

N Krietenstein, M Wal, S Watanabe, B Park… - Cell, 2016 - cell.com
Chromatin remodelers regulate genes by organizing nucleosomes around promoters, but
their individual contributions are obfuscated by the complex in vivo milieu of factor …

Genome information processing by the INO80 chromatin remodeler positions nucleosomes [preprint]

E Oberbeckmann, N Krietenstein, V Niebauer… - 2020 - repository.escholarship.umassmed …
The fundamental molecular determinants by which ATP-dependent chromatin remodelers
organize nucleosomes across eukaryotic genomes remain largely elusive. Here, chromatin …

On the role of transcription in positioning nucleosomes

Z Jiang, B Zhang - PLoS Computational Biology, 2021 - journals.plos.org
Nucleosome positioning is crucial for the genome's function. Though the role of DNA
sequence in positioning nucleosomes is well understood, a detailed mechanistic …

[PDF][PDF] Ruler elements in chromatin remodelers set nucleosome array spacing and phasing

M Moldt, A Schmid, P Cramer, CL Peterson… - umassmed.edu
Arrays of regularly spaced nucleosomes dominate chromatin and are often phased by
alignment to reference sites like active promoters. How the distances between nucleosomes …

Genome information processing by the INO80 chromatin remodeler positions nucleosomes

E Oberbeckmann, N Krietenstein, V Niebauer… - Nature …, 2021 - nature.com
The fundamental molecular determinants by which ATP-dependent chromatin remodelers
organize nucleosomes across eukaryotic genomes remain largely elusive. Here, chromatin …

Engineered chromatin remodeling proteins for precise nucleosome positioning

DA Donovan, JG Crandall, OGB Banks, ZD Jensvold… - Cell reports, 2019 - cell.com
Regulation of chromatin structure is essential for controlling access of DNA to factors that
require association with specific DNA sequences. Here we describe the development and …