[HTML][HTML] CoryneRegNet 7, the reference database and analysis platform for corynebacterial gene regulatory networks

MTD Parise, D Parise, RB Kato, JK Pauling, A Tauch… - Scientific data, 2020 - nature.com
We present the newest version of CoryneRegNet, the reference database for
corynebacterial regulatory interactions, available at www. exbio. wzw. tum. de/coryneregnet …

[HTML][HTML] CoryneRegNet 4.0–A reference database for corynebacterial gene regulatory networks

J Baumbach - BMC bioinformatics, 2007 - Springer
Background Detailed information on DNA-binding transcription factors (the key players in
the regulation of gene expression) and on transcriptional regulatory interactions of …

CoryneRegNet 6.0—Updated database content, new analysis methods and novel features focusing on community demands

J Pauling, R Röttger, A Tauch, V Azevedo… - Nucleic acids …, 2012 - academic.oup.com
Post-genomic analysis techniques such as next-generation sequencing have produced vast
amounts of data about micro organisms including genetic sequences, their functional …

[HTML][HTML] CoryneCenter–An online resource for the integrated analysis of corynebacterial genome and transcriptome data

H Neuweger, J Baumbach, S Albaum, T Bekel… - BMC systems …, 2007 - Springer
Background The introduction of high-throughput genome sequencing and post-genome
analysis technologies, eg DNA microarray approaches, has created the potential to unravel …

[HTML][HTML] The individual and common repertoire of DNA-binding transcriptional regulators of Corynebacterium glutamicum, Corynebacterium efficiens …

I Brune, K Brinkrolf, J Kalinowski, A Pühler, A Tauch - BMC genomics, 2005 - Springer
Abstract Background The genus Corynebacterium includes Gram-positive microorganisms
of great biotechnologically importance, such as Corynebacterium glutamicum and …

Integrated analysis and reconstruction of microbial transcriptional gene regulatory networks using CoryneRegNet

J Baumbach, T Wittkop, CK Kleindt, A Tauch - Nature Protocols, 2009 - nature.com
CoryneRegNet is the reference database and analysis platform for corynebacterial gene
regulatory networks. It provides web-based access to integrated data on gene regulatory …

[HTML][HTML] CoryneRegNet: an ontology-based data warehouse of corynebacterial transcription factors and regulatory networks

J Baumbach, K Brinkrolf, LF Czaja, S Rahmann… - BMC genomics, 2006 - Springer
Background The application of DNA microarray technology in post-genomic analysis of
bacterial genome sequences has allowed the generation of huge amounts of data related to …

CoryneRegNet 3.0—an interactive systems biology platform for the analysis of gene regulatory networks in corynebacteria and Escherichia coli

J Baumbach, T Wittkop, K Rademacher… - Journal of …, 2007 - Elsevier
CoryneRegNet is an ontology-based data warehouse for the reconstruction and
visualization of transcriptional regulatory interactions in prokaryotes. To extend the …

Transcriptional regulation of gene expression in Corynebacterium glutamicum: the role of global, master and local regulators in the modular and hierarchical gene …

J Schröder, A Tauch - FEMS microbiology reviews, 2010 - academic.oup.com
The genus Corynebacterium belongs to the taxonomic class Actinobacteria representing the
high G+ C branch of gram-positive bacteria. Among the most prominent members of this …

[HTML][HTML] Linking Cytoscape and the corynebacterial reference database CoryneRegNet

J Baumbach, L Apeltsin - BMC genomics, 2008 - Springer
Background Recently, the research community has seen an influx of data relating to
transcriptional regulatory interactions of Corynebacteria, organisms that are highly relevant …