Nucleoid-associated proteins shape chromatin structure and transcriptional regulation across the bacterial kingdom

HM Amemiya, J Schroeder, PL Freddolino - Transcription, 2021 - Taylor & Francis
Genome architecture has proven to be critical in determining gene regulation across almost
all domains of life. While many of the key components and mechanisms of eukaryotic …

Bacterial nucleoid-associated proteins, nucleoid structure and gene expression

SC Dillon, CJ Dorman - Nature Reviews Microbiology, 2010 - nature.com
Emerging models of the bacterial nucleoid show that nucleoid-associated proteins (NAPs)
and transcription contribute in combination to the dynamic nature of nucleoid structure …

Three‐dimensional chromosome re‐modelling: the integral mechanism of transcription regulation in bacteria

FZM Rashid, RT Dame - Molecular Microbiology, 2023 - Wiley Online Library
Nucleoid‐associated proteins (NAPs) are architectural proteins of the bacterial chromosome
and transcription factors that dynamically organise the chromosome and regulate gene …

Chromosome organization in bacteria: mechanistic insights into genome structure and function

RT Dame, FZM Rashid, DC Grainger - Nature Reviews Genetics, 2020 - nature.com
Bacterial chromosomes are folded to compact DNA and facilitate cellular processes.
Studying model bacteria has revealed aspects of chromosome folding that are applicable to …

When is a transcription factor a NAP?

CJ Dorman, MA Schumacher, MJ Bush… - Current opinion in …, 2020 - Elsevier
Highlights•Addresses the nature of the distinction between bacterial transcription factors and
nucleoid-associated proteins.•Proteins lie along a spectrum of influence extending from …

Transcription of bacterial chromatin

BA Shen, R Landick - Journal of molecular biology, 2019 - Elsevier
Decades of research have probed the interplay between chromatin (genomic DNA
associated with proteins and RNAs) and transcription by RNA polymerase (RNAP) in all …

Building bridges within the bacterial chromosome

D Song, JJ Loparo - Trends in Genetics, 2015 - cell.com
All organisms must dramatically compact their genomes to accommodate DNA within the
cell. Bacteria use a set of DNA-binding proteins with low sequence specificity called …

Bacterial chromatin

A Travers, G Muskhelishvili - Current opinion in genetics & development, 2005 - Elsevier
Recent studies have revealed that the bacterial nucleoid is a dynamic entity that alters its
overall structure in response to changes in both growth rate and growth phase. These …

Nucleoid associated proteins: the small organizers that help to cope with stress

J Hołówka, J Zakrzewska-Czerwińska - Frontiers in microbiology, 2020 - frontiersin.org
The bacterial chromosome must be efficiently compacted to fit inside the small and crowded
cell while remaining accessible for the protein complexes involved in replication …

Pervasive regulation of nucleoid structure and function by nucleoid-associated proteins

S Rimsky, A Travers - Current opinion in microbiology, 2011 - Elsevier
Bacterial DNA is organised in a compact nucleoid body that is tightly associated with the
coupled transcription and translation of mRNAs. This structure contains abundant DNA …