Pisces: A cross-modal contrastive learning approach to synergistic drug combination prediction

J Lin, H Xu, A Woicik, J Ma, S Wang - bioRxiv, 2022 - biorxiv.org
Drug combination therapy is a promising solution to many complicated diseases. Since
experimental measurements cannot be scaled to millions of candidate combinations, many …

[PDF][PDF] Complex diseases demand novel treatment strategies: understanding drug combination

RS Mello, VFA Sampaio, LF Maciel, V Sá… - Drug Combination …, 2022 - repositorio.usp.br
For many multigene or multifactorial diseases, the one-drug therapy for inhibiting a defined
molecular target is often less effective than combined treatments. Typically, drug …

Reconstructing gene expression and knockout effect scores from DNA mutation (Mut2Ex): methodology and application to cancer prediction problems

M Ramchandran, M Baron - arXiv preprint arXiv:2212.05170, 2022 - arxiv.org
Building prediction models for outcomes of clinical relevance when only a limited number of
mutational features are available causes considerable challenges due to the sparseness …

Sagittarius: Extrapolating Heterogeneous Time-Series Gene Expression Data

A Woicik, M Zhang, J Chan, J Ma, S Wang - bioRxiv, 2022 - biorxiv.org
Understanding the temporal dynamics of gene expression is crucial for developmental
biology, tumor biology, and biogerontology. However, some time points remain challenging …

Integrated Drug Mining Reveals Actionable Strategies Inhibiting Plexiform Neurofibromas

RM Brown, S Farouk Sait, G Dunn, A Sullivan… - Brain Sciences, 2022 - mdpi.com
Neurofibromatosis Type 1 (NF1) is one of the most common genetic tumor predisposition
syndromes, affecting up to 1 in 2500 individuals. Up to half of patients with NF1 develop …

[图书][B] Recent advances in cancer diagnostics and therapy: A nano-based approach

A Pandey, S Srivastava - 2022 - taylorfrancis.com
This book provides information about different types and stages of cancer and their subtypes
with their respective molecular mechanisms, etiology, histopathology, and cellular origins …

Analysis and modeling of cancer drug responses using cell cycle phase-specific rate effects

F Mohammadi, AS Meyer - 2022 - search.proquest.com
Identifying effective therapeutic treatment strategies is a major challenge to improving
outcomes for patients with breast cancer. To gain a comprehensive understanding of how …

Predicting Anticancer Synergistic Activity through Machine Learning and Natural Language Processing

H Yang, N Aniceto, C Allen, KC Bulusu… - Data Science, AI, and …, 2022 - taylorfrancis.com
A strategy based on machine learning (ML) and deep learning has emerged as a time-and
cost-efficient way to explore the large combination space. This chapter begins with an …

[图书][B] Algorithms for Matching Problems Under Data Accessibility Constraints

O Hanguir - 2022 - search.proquest.com
Traditionally, optimization problems in operations research have been studied in a complete
information setting; the input/data is collected and made fully accessible to the user, before …

[图书][B] Essays on Network Theory: Diffusion, Link Analysis, and Hypergraph Learning

S Wang - 2022 - search.proquest.com
Essays on Network Theory: Diffusion, Link Analysis, and Hypergraph Learning Shatian Wang
Submitted in partial fulfillment of the Page 1 Essays on Network Theory: Diffusion, Link Analysis …