Pathology: hub and integrator of modern, multidisciplinary [precision] oncology

Clinical Cancer Research, 2022 - AACR
Every profession has an essential, behind-the-scenes component without which it cannot
function. Medicine is no exception. Pathologists are one of medicine's group of specialists …

Breaking the immune complexity of the tumor microenvironment using single-cell technologies

S Caligola, F De Sanctis, S Canè, S Ugel - Frontiers in Genetics, 2022 - frontiersin.org
Tumors are not a simple aggregate of transformed cells but rather a complicated ecosystem
containing various components, including infiltrating immune cells, tumor-related stromal …

Multilevel mesoscale complexities in mesoregimes: Challenges in chemical and biochemical engineering

J Chen, Y Ren, WL Huang, L Zhang… - Annual Review of …, 2022 - annualreviews.org
This review discusses the complex behaviors in diverse chemical and biochemical systems
to elucidate their commonalities and thus help develop a mesoscience methodology to …

In Situ Cell Detection Using Terahertz Near-Field Microscopy

Z Li, Z Zang, J Wang, X Lu, Z Yang… - IEEE Transactions …, 2022 - ieeexplore.ieee.org
The photoconductive antenna microprobe-based terahertz (THz) near-field scanning
microscope has proven to overcome the diffraction limit and demonstrated the potential in …

Unravelling tumour microenvironment in melanoma at single-cell level and challenges to checkpoint immunotherapy

X Bai, C Quek - Genes, 2022 - mdpi.com
Melanoma is known as one of the most immunogenic tumours and is often characterised by
high mutation burden, neoantigen load and immune infiltrate. The application of …

Spatial multiomics analysis reveals only minor genetic and epigenetic changes in human liver cancer stem-like cells compared with other tumor parenchymal cells

D Liu, H Li, H Dong, M Qu, L Yang, L Chen… - Frontiers in Cell and …, 2022 - frontiersin.org
Cancer stem cells (CSCs) usually account for a very small tumor cell population but play
pivotal roles in human cancer development and recurrence. A fundamental question in …

Bioinformatics roadmap for therapy selection in cancer genomics

MJ Jiménez‐Santos, S García‐Martín… - Molecular …, 2022 - Wiley Online Library
Tumour heterogeneity is one of the main characteristics of cancer and can be categorised
into inter‐or intratumour heterogeneity. This heterogeneity has been revealed as one of the …

Integration of single cell data by disentangled representation learning

T Guo, Y Chen, M Shi, X Li, MQ Zhang - Nucleic Acids Research, 2022 - academic.oup.com
Recent developments of single cell RNA-sequencing technologies lead to the exponential
growth of single cell sequencing datasets across different conditions. Combining these …

Lung Cancer Computational Biology and Resources

L Cai, G Xiao, D Gerber… - Cold Spring …, 2022 - perspectivesinmedicine.cshlp.org
Comprehensive clinical, pathological, and molecular data, when appropriately integrated
with advanced computational approaches, are transforming the way we characterize and …

Sensei: how many samples to tell a change in cell type abundance?

S Liang, J Willis, J Dou, V Mohanty, Y Huang, E Vilar… - BMC …, 2022 - Springer
Cellular heterogeneity underlies cancer evolution and metastasis. Advances in single-cell
technologies such as single-cell RNA sequencing and mass cytometry have enabled …