Genpip: In-memory acceleration of genome analysis via tight integration of basecalling and read mapping

H Mao, M Alser, M Sadrosadati, C Firtina… - 2022 55th IEEE/ACM …, 2022 - ieeexplore.ieee.org
Nanopore sequencing is a widely-used high-throughput genome sequencing technology
that can sequence long fragments of a genome into raw electrical signals at low cost …
被引用次数：13 相关文章
[PDF] github.io

[PDF][PDF] GenPIP: In-Memory Acceleration of Genome Analysis via Tight Integration of Basecalling and Read Mapping

H Mao, M Alser, M Sadrosadati, C Firtina, A Baranwal… - adityamanglik.github.io
This paper proposes GenPIP, an in-memory genome analysis accelerator that tightly
integrates basecalling and read mapping. GenPIP improves the performance of the genome …

GenPIP: In-Memory Acceleration of Genome Analysis via Tight Integration of Basecalling and Read Mapping

H Mao, M Alser, M Sadrosadati, C Firtina… - arXiv preprint arXiv …, 2022 - arxiv.org
Nanopore sequencing is a widely-used high-throughput genome sequencing technology
that can sequence long fragments of a genome into raw electrical signals at low cost …

GenPIP: In-Memory Acceleration of Genome Analysis via Tight Integration of Basecalling and Read Mapping

H Mao, M Alser, M Sadrosadati, C Firtina, A Baranwal… - Mij - kratos4.ethz.ch
1. Background and Motivation 2. The state-of-the-art Solution 3. Potential Benefits 4.1.
GenPIP: Chunk-based Pipeline 4.2. GenPI Page 1 2.7x 6.1x 9x 0 4 8 12 No rm alized Sp …

GenPIP: In-Memory Acceleration of Genome Analysis via Tight Integration of Basecalling and Read Mapping

H Mao, M Alser, M Sadrosadati, C Firtina… - 2022 55th IEEE/ACM …, 2022 - computer.org
Nanopore sequencing is a widely-used high-throughput genome sequencing technology
that can sequence long fragments of a genome into raw electrical signals at low cost …

GenPIP: In-Memory Acceleration of Genome Analysis via Tight Integration of Basecalling and Read Mapping

H Mao, M Alser, M Sadrosadati, C Firtina… - arXiv e …, 2022 - ui.adsabs.harvard.edu
Nanopore sequencing is a widely-used high-throughput genome sequencing technology
that can sequence long fragments of a genome into raw electrical signals at low cost …

GenPIP: In-Memory Acceleration of Genome Analysis via Tight Integration of Basecalling and Read Mapping

H Mao, M Alser, M Sadrosadati… - 2022 55th IEEE …, 2022 - research-collection.ethz.ch
Nanopore sequencing is a widely-used high-throughput genome sequencing technology
that can sequence long fragments of a genome into raw electrical signals at low cost …

GenPIP: In-Memory Acceleration of Genome Analysis via Tight Integration of Basecalling and Read Mapping

H Mao, M Alser, M Sadrosadati, C Firtina… - Proceedings of the 55th …, 2022 - dl.acm.org
Nanopore sequencing is a widely-used high-throughput genome sequencing technology
that can sequence long fragments of a genome into raw electrical signals at low cost …