Predicting cancer drug response using parallel heterogeneous graph convolutional networks with neighborhood interactions

W Peng, H Liu, W Dai, N Yu, J Wang - Bioinformatics, 2022 - academic.oup.com
Motivation Due to cancer heterogeneity, the therapeutic effect may not be the same when a
cohort of patients of the same cancer type receive the same treatment. The anticancer drug …

Improving drug response prediction based on two-space graph convolution

W Peng, T Chen, H Liu, W Dai, N Yu, W Lan - Computers in Biology and …, 2023 - Elsevier
Patients with the same cancer types may present different genomic features and therefore
have different drug sensitivities. Accordingly, correctly predicting patients' responses to the …

[HTML][HTML] Graph convolutional network for drug response prediction using gene expression data

S Kim, S Bae, Y Piao, K Jo - Mathematics, 2021 - mdpi.com
Genomic profiles of cancer patients such as gene expression have become a major source
to predict responses to drugs in the era of personalized medicine. As large-scale drug …

GADRP: graph convolutional networks and autoencoders for cancer drug response prediction

H Wang, C Dai, Y Wen, X Wang, W Liu… - Briefings in …, 2023 - academic.oup.com
Drug response prediction in cancer cell lines is of great significance in personalized
medicine. In this study, we propose GADRP, a cancer drug response prediction model …

DeepCDR: a hybrid graph convolutional network for predicting cancer drug response

Q Liu, Z Hu, R Jiang, M Zhou - Bioinformatics, 2020 - academic.oup.com
Motivation Accurate prediction of cancer drug response (CDR) is challenging due to the
uncertainty of drug efficacy and heterogeneity of cancer patients. Strong evidences have …

GraphCDR: a graph neural network method with contrastive learning for cancer drug response prediction

X Liu, C Song, F Huang, H Fu, W Xiao… - Briefings in …, 2022 - academic.oup.com
Predicting the response of a cancer cell line to a therapeutic drug is an important topic in
modern oncology that can help personalized treatment for cancers. Although numerous …

[HTML][HTML] DualGCN: a dual graph convolutional network model to predict cancer drug response

T Ma, Q Liu, H Li, M Zhou, R Jiang, X Zhang - BMC bioinformatics, 2022 - Springer
Background Drug resistance is a critical obstacle in cancer therapy. Discovering cancer drug
response is important to improve anti-cancer drug treatment and guide anti-cancer drug …

Graph convolutional networks for drug response prediction

T Nguyen, GTT Nguyen, T Nguyen… - IEEE/ACM transactions …, 2021 - ieeexplore.ieee.org
Background: Drug response prediction is an important problem in computational
personalized medicine. Many machine-learning-based methods, especially deep learning …

Predicting drug response based on multi-omics fusion and graph convolution

W Peng, T Chen, W Dai - IEEE Journal of Biomedical and …, 2021 - ieeexplore.ieee.org
Different cancer patients may respond differently to cancer treatment due to the
heterogeneity of cancer. It is an urgent task to develop an efficient computational method to …

HMM-GDAN: Hybrid multi-view and multi-scale graph duplex-attention networks for drug response prediction in cancer

Y Liu, S Tong, Y Chen - Neural Networks, 2023 - Elsevier
Precision medicine is devoted to discovering personalized therapy for complex and difficult
diseases like cancer. Many machine learning approaches have been developed for drug …