Cancer proteogenomics: current impact and future prospects

DR Mani, K Krug, B Zhang, S Satpathy… - Nature Reviews …, 2022 - nature.com
Genomic analyses in cancer have been enormously impactful, leading to the identification of
driver mutations and development of targeted therapies. But the functions of the vast majority …

Clinical potential of mass spectrometry-based proteogenomics

B Zhang, JR Whiteaker, AN Hoofnagle… - Nature Reviews …, 2019 - nature.com
Cancer genomics research aims to advance personalized oncology by finding and targeting
specific genetic alterations associated with cancers. In genome-driven oncology, treatments …

The next horizon in precision oncology: Proteogenomics to inform cancer diagnosis and treatment

H Rodriguez, JC Zenklusen, LM Staudt, JH Doroshow… - Cell, 2021 - cell.com
When it comes to precision oncology, proteogenomics may provide better prospects to the
clinical characterization of tumors, help make a more accurate diagnosis of cancer, and …

The case for proteomics and phospho‐proteomics in personalized cancer medicine

S Doll, F Gnad, M Mann - PROTEOMICS–Clinical Applications, 2019 - Wiley Online Library
The concept of personalized medicine is predominantly been pursued through genomic and
transcriptomic technologies, leading to the identification of multiple mutations in a large …

Onco-proteogenomics: cancer proteomics joins forces with genomics

JA Alfaro, A Sinha, T Kislinger, PC Boutros - Nature methods, 2014 - nature.com
The complexities of tumor genomes are rapidly being uncovered, but how they are regulated
into functional proteomes remains poorly understood. Standard proteomics workflows use …

The grand challenge to decipher the cancer proteome

S Hanash, A Taguchi - Nature reviews cancer, 2010 - nature.com
The quest to decipher protein alterations in cancer has spanned well over half a century.
The vast dynamic range of protein abundance coupled with a plethora of isoforms and …

Proteomics in cancer research

W Wu, W Hu, JJ Kavanagh - International Journal of Gynecologic …, 2002 - ijgc.bmj.com
With the human genome sequence now determined, the field of molecular medicine is
moving beyond genomics to proteomics. In the field of cancer research, the key question is …

Proteomics for cancer biomarker discovery

PR Srinivas, M Verma, Y Zhao, S Srivastava - Clinical chemistry, 2002 - academic.oup.com
The emergence of novel technologies allows researchers to facilitate the comprehensive
analyses of genomes, transcriptomes, and proteomes in health and disease. The …

Connecting genomic alterations to cancer biology with proteomics: the NCI Clinical Proteomic Tumor Analysis Consortium

MJ Ellis, M Gillette, SA Carr, AG Paulovich, RD Smith… - Cancer discovery, 2013 - AACR
The National Cancer Institute (NCI) Clinical Proteomic Tumor Analysis Consortium is
applying the latest generation of proteomic technologies to genomically annotated tumors …

Integrating cancer genomics and proteomics in the post‐genome era

SM Hanash, MP Bobek, DS Rickman… - PROTEOMICS …, 2002 - Wiley Online Library
The dawn of the post‐genome era is leading to extraordinary opportunities in biomedicine.
Our group has embarked on a major effort to integrate genomics, transcriptomics and …