Comparative single-cell analyses identify shared and divergent features of human and mouse kidney development

S Kim, K Koppitch, RK Parvez, J Guo, MA Achieng… - bioRxiv, 2023 - biorxiv.org
Mammalian kidneys maintain fluid homeostasis through the cellular activity of nephrons and
the conjoined collecting system. Each epithelial network originates from distinct progenitor …

Single cell resolution regulatory landscape of the mouse kidney highlights cellular differentiation programs and renal disease targets

Z Miao, MS Balzer, Z Ma, H Liu, J Wu, R Shrestha… - bioRxiv, 2020 - biorxiv.org
The kidney has a very limited capacity to repair. Defining cellular differentiation during
development therefore could aid the understanding of homeostatic and maladaptive …

[HTML][HTML] Single cell regulatory landscape of the mouse kidney highlights cellular differentiation programs and disease targets

Z Miao, MS Balzer, Z Ma, H Liu, J Wu… - Nature …, 2021 - nature.com
Determining the epigenetic program that generates unique cell types in the kidney is critical
for understanding cell-type heterogeneity during tissue homeostasis and injury response …

[HTML][HTML] Single-cell profiling reveals sex, lineage, and regional diversity in the mouse kidney

A Ransick, NO Lindström, J Liu, Q Zhu, JJ Guo… - Developmental cell, 2019 - cell.com
Chronic kidney disease affects 10% of the population with notable differences in ethnic and
sex-related susceptibility to kidney injury and disease. Kidney dysfunction leads to …

Single-cell chromatin and gene-regulatory dynamics of mouse nephron progenitors

S Hilliard, G Tortelote, H Liu, CH Chen… - Journal of the …, 2022 - journals.lww.com
Background We reasoned that unraveling the dynamic changes in accessibility of genomic
regulatory elements and gene expression at single-cell resolution will inform the basic …

Building an atlas of gene expression driving kidney development: pushing the limits of resolution

SS Potter, EW Brunskill - Pediatric Nephrology, 2014 - Springer
Changing gene expression patterns is the essential driver of developmental processes.
Growth factors, micro-RNAs, long intergenic noncoding RNAs, and epigenetic marks, such …

Comprehensive cell type specific transcriptomics of the human kidney

V Sivakamasundari, M Bolisetty, S Sivajothi… - BioRxiv, 2017 - biorxiv.org
The human kidney is a complex organ composed of specialized cell types. To better define
this cellular complexity, we profiled the individual transcriptomes of 22,469 normal human …

[HTML][HTML] Integrating spatial transcriptomics with single-cell transcriptomics reveals a spatiotemporal gene landscape of the human developing kidney

H Wu, F Liu, Y Shangguan, Y Yang, W Shi, W Hu… - Cell & Bioscience, 2022 - Springer
Background Research on spatiotemporal gene landscape can provide insights into the
spatial characteristics of human kidney development and facilitate kidney organoid …

Comprehensive single cell RNAseq analysis of the kidney reveals novel cell types and unexpected cell plasticity

J Park, R Shrestha, C Qiu, A Kondo, S Huang, M Werth… - bioRxiv, 2017 - biorxiv.org
A key limitations to understand kidney function and disease development has been that
specific cell types responsible for specific homeostatic kidney function or disease …

[HTML][HTML] Single cell transcriptional and chromatin accessibility profiling redefine cellular heterogeneity in the adult human kidney

Y Muto, PC Wilson, N Ledru, H Wu, H Dimke… - Nature …, 2021 - nature.com
The integration of single cell transcriptome and chromatin accessibility datasets enables a
deeper understanding of cell heterogeneity. We performed single nucleus ATAC (snATAC …