IRIS: Discovery of cancer immunotherapy targets arising from pre-mRNA alternative splicing

Y Pan, JW Phillips, BD Zhang… - Proceedings of the …, 2023 - National Acad Sciences
Alternative splicing (AS) is prevalent in cancer, generating an extensive but largely
unexplored repertoire of novel immunotherapy targets. We describe I soform peptides from …

Splicing neoantigen discovery with SNAF reveals shared targets for cancer immunotherapy

G Li, S Mahajan, S Ma, ED Jeffery, X Zhang… - Science Translational …, 2024 - science.org
Immunotherapy has emerged as a crucial strategy to combat cancer by “reprogramming” a
patient's own immune system. Although immunotherapy is typically reserved for patients with …

Alternative splicing in cancer and immune cells

A Bernard, R Boidot, F Végran - Cancers, 2022 - mdpi.com
Simple Summary Alternative splicing is one of the most fabulous and important mechanism
in the cell. Alternative splicing is capable of generating many proteins from a single gene …

[HTML][HTML] ASNEO: identification of personalized alternative splicing based neoantigens with RNA-seq

Z Zhang, C Zhou, L Tang, Y Gong, Z Wei… - Aging (Albany …, 2020 - ncbi.nlm.nih.gov
Cancer neoantigens have shown great potential in immunotherapy, while current software
focuses on identifying neoantigens which are derived from SNVs, indels or gene fusions …

T cell recognition of tumor neoantigens and insights into T cell immunotherapy

MJW Sim, PD Sun - Frontiers in Immunology, 2022 - frontiersin.org
In cancer, non-synonymous DNA base changes alter protein sequence and produce
neoantigens that are detected by the immune system. For immune detection, neoantigens …

Alternative mRNA splicing in cancer immunotherapy

L Frankiw, D Baltimore, G Li - Nature Reviews Immunology, 2019 - nature.com
Immunotherapies are yielding effective treatments for several previously untreatable
cancers. Still, the identification of suitable antigens specific to the tumour that can be targets …

An analysis of natural T cell responses to predicted tumor neoepitopes

AM Bjerregaard, M Nielsen, V Jurtz, CM Barra… - Frontiers in …, 2017 - frontiersin.org
Personalization of cancer immunotherapies such as therapeutic vaccines and adoptive T-
cell therapy may benefit from efficient identification and targeting of patient-specific …

Impacts and mechanisms of alternative mRNA splicing in cancer metabolism, immune response, and therapeutics

Q Peng, Y Zhou, L Oyang, N Wu, Y Tang, M Su, X Luo… - Molecular Therapy, 2022 - cell.com
Alternative pre-mRNA splicing (AS) provides the potential to produce diversity at RNA and
protein levels. Disruptions in the regulation of pre-mRNA splicing can lead to diseases. With …

IEAtlas: an atlas of HLA-presented immune epitopes derived from non-coding regions

Y Cai, D Lv, D Li, J Yin, Y Ma, Y Luo, L Fu… - Nucleic acids …, 2023 - academic.oup.com
Cancer-related epitopes can engage the immune system against tumor cells, thus exploring
epitopes derived from non-coding regions is emerging as a fascinating field in cancer …

[HTML][HTML] Identification of neoantigens derived from alternative splicing and RNA modification

J Park, YJ Chung - Genomics & informatics, 2019 - ncbi.nlm.nih.gov
The acquisition of somatic mutations is the most common event in cancer. Neoantigens
expressed from genes with mutations acquired during carcinogenesis can be tumor-specific …