NCI cancer research data commons: lessons learned and future state

E Kim, T Davidsen, BN Davis-Dusenbery, A Baumann… - Cancer Research, 2024 - AACR
More than ever, scientific progress in cancer research hinges on our ability to combine
datasets and extract meaningful interpretations to better understand diseases and ultimately …

A comprehensive infrastructure for big data in cancer research: accelerating cancer research and precision medicine

IV Hinkson, TM Davidsen, JD Klemm… - Frontiers in cell and …, 2017 - frontiersin.org
Advancements in next-generation sequencing and other-omics technologies are
accelerating the detailed molecular characterization of individual patient tumors, and driving …

NCI Cancer Research Data Commons: core standards and services

A Brady, A Charbonneau, RL Grossman, HH Creasy… - Cancer Research, 2024 - AACR
Abstract The NCI Cancer Research Data Commons (CRDC) is a collection of data
commons, analysis platforms, and tools that make existing cancer data more findable and …

NCI cancer research data commons: cloud-based analytic resources

D Pot, Z Worman, A Baumann, S Pathak, R Beck… - Cancer Research, 2024 - AACR
Abstract The NCI's Cloud Resources (CR) are the analytical components of the Cancer
Research Data Commons (CRDC) ecosystem. This review describes how the three CRs …

NCI Cancer Research Data Commons: resources to share key cancer data

Z Wang, TM Davidsen, GR Kuffel, KD Addepalli, A Bell… - Cancer Research, 2024 - AACR
Since 2014, the NCI has launched a series of data commons as part of the Cancer Research
Data Commons (CRDC) ecosystem housing genomic, proteomic, imaging, and clinical data …

NCI imaging data commons

A Fedorov, WJR Longabaugh, D Pot, DA Clunie… - Cancer research, 2021 - AACR
Abstract The National Cancer Institute (NCI) Cancer Research Data Commons (CRDC) aims
to establish a national cloud-based data science infrastructure. Imaging Data Commons …

Tri© DB: an integrated platform of knowledgebase and reporting system for cancer precision medicine

W Jiang, PY Wang, Q Zhou, QT Lin, Y Yao… - Journal of Translational …, 2023 - Springer
Background With the development of cancer precision medicine, a huge amount of high-
dimensional cancer information has rapidly accumulated regarding gene alterations …

Developing cancer informatics applications and tools using the NCI genomic data commons API

S Wilson, M Fitzsimons, M Ferguson, A Heath… - Cancer research, 2017 - AACR
Abstract The NCI Genomic Data Commons (GDC) was launched in 2016 and makes
available over 4 petabytes (PB) of cancer genomic and associated clinical data to the …

Case studies for overcoming challenges in using big data in cancer

SM Sweeney, HK Hamadeh, N Abrams, SJ Adam… - Cancer research, 2023 - AACR
The analysis of big healthcare data has enormous potential as a tool for advancing oncology
drug development and patient treatment, particularly in the context of precision medicine …

Progress toward cancer data ecosystems

RL Grossman - The Cancer Journal, 2018 - journals.lww.com
One of the recommendations of the Cancer Moonshot Blue Ribbon Panel report from 2016
was the creation of a national cancer data ecosystem. We review some of the approaches …