Single-nucleus RNA-sequencing of autosomal dominant Alzheimer disease and risk variant carriers

L Brase, SF You, R D'Oliveira Albanus… - Nature …, 2023 - nature.com
Genetic studies of Alzheimer disease (AD) have prioritized variants in genes related to the
amyloid cascade, lipid metabolism, and neuroimmune modulation. However, the cell …

CITEMOXMBD: A flexible single-cell multimodal omics analysis framework to reveal the heterogeneity of immune cells

H Hu, R Liu, C Zhao, Y Lu, Y Xiong, L Chen, J Jin… - RNA biology, 2022 - Taylor & Francis
Simultaneous measurement of multiple modalities in single-cell analysis, represented by
CITE-seq, is a promising approach to link transcriptional changes to cellular phenotype and …

Analysis of the human kidney transcriptome and plasma proteome identifies markers of proximal tubule maladaptation to injury

Y Wen, E Su, L Xu, S Menez, DG Moledina… - Science translational …, 2023 - science.org
Acute kidney injury (AKI) is a major risk factor for long-term adverse outcomes, including
chronic kidney disease. In mouse models of AKI, maladaptive repair of the injured proximal …

Single-cell N6-methyladenosine regulator patterns guide intercellular communication of tumor microenvironment that contribute to colorectal cancer progression and …

Y Gao, H Wang, S Chen, R An, Y Chu, G Li… - Journal of Translational …, 2022 - Springer
Abstract Background N6-methyladenosine (m6A) RNA methylation plays a critical role in key
genetic events for various cancers; yet, how m6A functions within the tumor …

Single-cell multi-omics profiling of human preimplantation embryos identifies cytoskeletal defects during embryonic arrest

T Wang, J Peng, J Fan, N Tang, R Hua, X Zhou… - Nature Cell …, 2024 - nature.com
Human in vitro fertilized embryos exhibit low developmental capabilities, and the
mechanisms that underlie embryonic arrest remain unclear. Here using a single-cell multi …

Differentiation‐related epigenomic changes define clinically distinct keratinocyte cancer subclasses

L Solé‐Boldo, G Raddatz, J Gutekunst… - Molecular systems …, 2022 - embopress.org
Keratinocyte cancers (KC) are the most prevalent malignancies in fair‐skinned populations,
posing a significant medical and economic burden to health systems. KC originate in the …

Uncovering neuroinflammation-related modules and potential repurposing drugs for Alzheimer's disease through multi-omics data integrative analysis

S Li, C Lu, Z Zhao, D Lu, G Zheng - Frontiers in Aging Neuroscience, 2023 - frontiersin.org
Background Neuroinflammation is one of the key factors leading to neuron death and
synapse dysfunction in Alzheimer's disease (AD). Amyloid-β (Aβ) is thought to have an …

Single-cell transcriptomics reveals maturation of transplanted stem cell–derived retinal pigment epithelial cells toward native state

BH Parikh, P Blakeley, K Regha, Z Liu… - Proceedings of the …, 2023 - National Acad Sciences
Transplantation of stem cell–derived retinal pigment epithelial (RPE) cells is considered a
viable therapeutic option for age-related macular degeneration (AMD). Several landmark …

Dual functions of TET1 in germ layer lineage bifurcation distinguished by genomic context and dependence on 5-methylcytosine oxidation

BK van der Veer, L Chen, C Custers… - Nucleic Acids …, 2023 - academic.oup.com
Gastrulation begins when the epiblast forms the primitive streak or becomes definitive
ectoderm. During this lineage bifurcation, the DNA dioxygenase TET1 has bipartite functions …

Exploring the resistance mechanism of triple-negative breast cancer to paclitaxel through the scRNA-seq analysis

W Gao, L Sun, J Gai, Y Cao, S Zhang - Plos one, 2024 - journals.plos.org
Background The triple negative breast cancer (TNBC) is the most malignant subtype of
breast cancer with high aggressiveness. Although paclitaxel-based chemotherapy scenario …