[HTML][HTML] The many alternative faces of macrophage activation

DA Hume - Frontiers in immunology, 2015 - frontiersin.org
Monocytes and macrophages provide the first line of defense against pathogens. They also
initiate acquired immunity by processing and presenting antigens and provide the …

Advanced applications of RNA sequencing and challenges

Y Han, S Gao, K Muegge, W Zhang… - … and biology insights, 2015 - journals.sagepub.com
Next-generation sequencing technologies have revolutionarily advanced sequence-based
research with the advantages of high-throughput, high-sensitivity, and high-speed. RNA-seq …

Gene co-expression analysis for functional classification and gene–disease predictions

S Van Dam, U Vosa, A van der Graaf… - Briefings in …, 2018 - academic.oup.com
Gene co-expression networks can be used to associate genes of unknown function with
biological processes, to prioritize candidate disease genes or to discern transcriptional …

A multidimensional systems biology analysis of cellular senescence in aging and disease

RA Avelar, JG Ortega, R Tacutu, EJ Tyler, D Bennett… - Genome biology, 2020 - Springer
Background Cellular senescence, a permanent state of replicative arrest in otherwise
proliferating cells, is a hallmark of aging and has been linked to aging-related diseases …

[HTML][HTML] Gene size matters: an analysis of gene length in the human genome

I Lopes, G Altab, P Raina, JOP De Magalhães - Frontiers in genetics, 2021 - frontiersin.org
While it is expected for gene length to be associated with factors such as intron number and
evolutionary conservation, we are yet to understand the connections between gene length …

[PDF][PDF] Insights into the evolution of longevity from the bowhead whale genome

M Keane, J Semeiks, AE Webb, YI Li, V Quesada… - Cell reports, 2015 - cell.com
The bowhead whale (Balaena mysticetus) is estimated to live over 200 years and is possibly
the longest-living mammal. These animals should possess protective molecular adaptations …

Gene regulatory network inference resources: A practical overview

D Mercatelli, L Scalambra, L Triboli, F Ray… - Biochimica et Biophysica …, 2020 - Elsevier
Transcriptional regulation is a fundamental molecular mechanism involved in almost every
aspect of life, from homeostasis to development, from metabolism to behavior, from reaction …

Integrative methods for analyzing big data in precision medicine

V Gligorijević, N Malod‐Dognin, N Pržulj - Proteomics, 2016 - Wiley Online Library
We provide an overview of recent developments in big data analyses in the context of
precision medicine and health informatics. With the advance in technologies capturing …

Correlation AnalyzeR: functional predictions from gene co-expression correlations

HE Miller, AJR Bishop - BMC bioinformatics, 2021 - Springer
Background Co-expression correlations provide the ability to predict gene functionality
within specific biological contexts, such as different tissue and disease conditions. However …

GeneFriends: gene co-expression databases and tools for humans and model organisms

P Raina, R Guinea, K Chatsirisupachai… - Nucleic Acids …, 2023 - academic.oup.com
Gene co-expression analysis has emerged as a powerful method to provide insights into
gene function and regulation. The rapid growth of publicly available RNA-sequencing (RNA …