How to Sustain a Scientific Open-Source Software Ecosystem: Learning from the Astropy Project

J Sun, A Patil, Y Li, JLC Guo, S Zhou - arXiv preprint arXiv:2402.15081, 2024 - arxiv.org
Scientific open-source software (OSS) has greatly benefited research communities through
its transparent and collaborative nature. Given its critical role in scientific research, ensuring …

“Automatic control knowledge repository”–a computational approach for simpler and more robust reproducibility of results in control theory

C Knoll, R Heedt - … Conference on System Theory, Control and …, 2020 - ieeexplore.ieee.org
As many other disciplines, control theory to some degree suffers from a reproducibility crisis.
In particular, since computational methods like simulation, numeric approximation or …

Deploying healthcare simulation models using containerization and continuous integration

A Harper, T Monks, S Manzi - 2023 - osf.io
Methods or approaches from disciplines outside of OR Modeling and Simulation (M&S) can
potentially increase the functionality of simulation models. In healthcare research, where …

Software testing in microbial bioinformatics: a call to action

BCL van der Putten, CI Mendes… - Microbial …, 2022 - microbiologyresearch.org
Computational algorithms have become an essential component of research, with great
efforts by the scientific community to raise standards on development and distribution of …

NeuroCI: Continuous Integration of Neuroimaging Results Across Software Pipelines and Datasets

J Sanz-Robinson, A Jahanpour… - 2022 IEEE 18th …, 2022 - ieeexplore.ieee.org
Neuroimaging study results can vary significantly depending on the datasets and processing
pipelines utilized by researchers to run their analyses, contributing to reproducibility issues …

Active maintenance: A proposal for the Long-Term computational reproducibility of scientific results

L Peer, LV Orr, A Coppock - PS: Political Science & Politics, 2021 - cambridge.org
Computational reproducibility, or the ability to reproduce analytic results of a scientific study
on the basis of publicly available code and data, is a shared goal of many researchers …

Designing community tracking indicators for open and inclusive scholarship

M Altman - Proceedings of the Association for Information …, 2022 - Wiley Online Library
There is evidence that scholarly processes have bias and create barriers to inclusion; more
openness in scholarly communication is needed. Progress towards a better scholarly …

Tool-based Support for the FAIR Principles for Control Theoretic Results: The'Automatic Control Knowledge Repository'

C Knoll, R Heedt - System Theory, Control and Computing Journal, 2021 - stccj.ucv.ro
In 2016 a collection of guiding principles for the management of scientific data was
proposed by a consortium of scientists and organizations under the acronym FAIR …

The Practice of Ensuring Repeatable and Reproducible Computational Models

HM Sauro - arXiv preprint arXiv:2107.05386, 2021 - arxiv.org
Recent studies have shown that the majority of published computational models in systems
biology and physiology are not repeatable or reproducible. There are a variety of reasons for …

Leveraging DevOps for Scientific Computing

P Nuyujukian - arXiv preprint arXiv:2310.08247, 2023 - arxiv.org
Critical goals of scientific computing are to increase scientific rigor, reproducibility, and
transparency while keeping up with ever-increasing computational demands. This work …